crg-cnag Goto Github PK

anubis

Python package for the analysis of tn-seq data

biocoremiscopen

Miscellaneous scripts

callings-nf

GATK RNA-Seq Variant Calling in Nextflow

covid19testlab

A set of guidelines, SoPs, methodologies, software etc. for turning a research lab with PCR and RNA expertise into an industrial scale covid-19 testing facility.

docker-centos-perlbrew

Basic Docker image for running CentOS with perlbrew installed

elmseq

eosc-pilot

EOSC pilot project

fastq2loxdel

Basic pipeline to extract lox-derived deletions

fastqins

Pipeline for transposon sequencing processing

gem3

GEM Mapper (Version 3)

genome.prbb.org

Resources for generating genome.prbb.org website

good-bionfo-2018-vc

Good Practices Bioinfo 2018 - version control

killswitch

Defining variants (SNPs, insertions and deletions) for a set of HiSeq samples exploring the variability in populations of M. pneumoniae transformed with a killswitch cassette

make_tool_desc_for_multiqc

This script gives you the version of the used tools and their reference.

metabolicpathvariationcoeff

Code to run the randomization analysis on metabolic paths of M. pneumoniae and M. agalactiae

mpistat

Toolchain for collecting and reporting on inode metadata for HPC filesystems,

ngs2016ws

NGS 2016 post-conference workshop documentation

ngs2017-nf

ngs2017ws-docs

NGS 2017 Post-Conference Workshop Documentation

pipeline_roesti

Pipeline to analyze bacterial RNA-seq data from RNA-seq and ribo-seq (ribosome profiling) experiments.

protrein

Protrein EU project

robustica

customizable robust Independent Component Analysis (ICA)

submit_request

How to submit requests to facility using agendo

topos

Tissue of Origin Predictor of Onco-Samples (TOPOS), a versatile machine learning classifier for various types of malignant or healthy human cells.