Topic: protein-folding Goto Github
Some thing interesting about protein-folding
Some thing interesting about protein-folding
protein-folding,CTB project
Organization: 3d-circle
Home Page: https://hp-folding.firebaseapp.com
protein-folding,CA-2-HCOMB is a tool for simplifying single-chain protein structures from PDB files into manageable models like various honeycombs, retaining essential information for in-depth computations. It's efficient for large datasets and machine learning, and user-friendly for research and education.
User: ahabegger
protein-folding,We seek a classifier that will predict if a protein sequence (+3D coordinates) will fold.
User: alec-loftus
protein-folding,"Train Your Reinforcement Learning Algorithm To This Protein Folding Problem Simulation". This is part of my bachelor thesis. The latest version of this env is in the LogDQN_ProteinHP repository.
User: alvinwatner
protein-folding,The working repository for my bachelor thesis with title : "LOGDQN DEEP REINFORCEMENT LEARNING IMPLEMENTATION FOR SOLVING HYDROPHOBIC-POLAR MODEL PROTEIN FOLDING PROBLEM (Tendean et al, 2020)"
User: alvinwatner
protein-folding,A package for protein conformational ensemble analyses based on a differential geometry representation of protein backbones.
User: amarinhosn
protein-folding,ResNetQA: Improved protein model quality assessment by integrating sequential and pairwise features using deep learning
User: andersjing
protein-folding,Lightning-Fast Template-free Protein Folding based on Predicted Residue Contacts and Secondary Structure
User: antoinepassemiers
protein-folding,Your open-source alternative to AlphaFold3๐
User: astrabert
protein-folding,Infrastructure template and Jupyter notebooks for running RoseTTAFold on AWS Batch.
Organization: aws-samples
protein-folding,
User: berylgithub
protein-folding,Hybridized distance- and contact-based hierarchical protein folding
Organization: bhattacharya-lab
protein-folding,An interactive visual simulator for distance-based protein folding
Organization: bhattacharya-lab
protein-folding,Python package for generating Markov state models
Organization: biokt
protein-folding,sbm-tools is a simple python package for creating, modifying, and maintaining input files for native Structure-Based Model simulations to be used with the popular simulation software GROMACS.
User: c-sinner
protein-folding,A Monte-Carlo Code: Sequential Importance Sampling with Pilot-Exploration Resampling (SISPER) Applied to a 2D Protein Folding
User: caizkun
protein-folding,Deep learning for protein science
User: conradry
protein-folding,Protein folding is the physical process by which a protein chain attains its functional three-dimensional structure from a simple sequence of amino acids.
User: dynexmarketplace
protein-folding,AlphaMod's official repository for protein folding
User: fabio-gil-z
protein-folding,Optimizing AlphaFold Training and Inference on GPU Clusters
Organization: hpcaitech
protein-folding,Code used for our paper, Variable Regions of p53 Isoforms Allosterically Hard Code DNA Interaction
User: iarmourgarb
protein-folding,FrameDiPT: an SE(3) diffusion model for protein structure inpainting
Organization: instadeepai
Home Page: https://www.biorxiv.org/content/10.1101/2023.11.21.568057v2
protein-folding,๐งฌ ManyFold: An efficient and flexible library for training and validating protein folding models
Organization: instadeepai
protein-folding,Exploring Uniform Random Sampling in HP Model Protein Folding
User: jessekommandeur
protein-folding,A proof-of-concept for using AlphaFold with new amino acid sequences (this may change to a full project in the future).
User: jhrcook
protein-folding,A curated list of awesome protein design research, software and resources.
User: johnnytam100
protein-folding,Examples for SDAccel 2017.1+ on AWS F1 instances
User: lorenzoditucci
protein-folding,To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released
User: lucidrains
protein-folding,Implementation of the Equiformer, SE3/E3 equivariant attention network that reaches new SOTA, and adopted for use by EquiFold for protein folding
User: lucidrains
protein-folding,Implementation of Invariant Point Attention, used for coordinate refinement in the structure module of Alphafold2, as a standalone Pytorch module
User: lucidrains
protein-folding,Implementation of trRosetta and trDesign for Pytorch, made into a convenient package, for protein structure prediction and design
User: lucidrains
protein-folding,Implementation of the Triangle Multiplicative module, used in Alphafold2 as an efficient way to mix rows or columns of a 2d feature map, as a standalone package for Pytorch
User: lucidrains
protein-folding,Source code and data for fast folding reduction algorithm
User: luisgarreta
protein-folding,Decentralized Protein Folding Bittensor Subnet
Organization: macrocosm-os
Home Page: https://www.macrocosmos.ai/sn25
protein-folding,Python library for implementing geometrical representations of curves.
User: mckeownish
protein-folding,Selecting Features for Markov Modeling: A Case Study on HP35
Organization: moldyn
Home Page: https://doi.org/10.48550/ARXIV.2303.03814
protein-folding,Protein 3D structure prediction pipeline
Organization: nf-core
Home Page: https://nf-co.re/proteinfold
protein-folding,Prospr is a universal toolbox for protein structure prediction within the HP-model. The Python package is based on a C++ core, which gives Prospr its high performance. The C++ core is made available as a separate zip file to facilitate high-performance computing applications. The package comes with many prediction algorithms and datasets to use.
User: okkevaneck
protein-folding,The largest open-source dataset for Protein Single Sequence Secondary Structure prediction.
User: omarperacha
Home Page: https://www.future-science.com/doi/10.2144/btn-2023-0024
protein-folding,Bio-Computing Platform Featuring Large-Scale Representation Learning and Multi-Task Deep Learning โ่บๆๆกจโ็็ฉ่ฎก็ฎๅทฅๅ ท้
Organization: paddlepaddle
protein-folding,Protein structure prediction using optimization methods from the field of machine learning
User: philippthoelke
protein-folding,Singularity recipe for AlphaFold
User: prehensilecode
protein-folding,Quantum algorithms for protein structure prediction. Language: Python (Qiskit). Platform: IBM Quantum's backends and simulators.
User: renatawong
protein-folding,Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
Organization: rosettacommons
Home Page: https://rosettacommons.github.io/PyRosetta.notebooks/
protein-folding,A bash script for an automated Rosetta Abinitio folding simulation on an HPC
User: sarisabban
protein-folding,OPUS-Fold: An Open-Source Protein Folding Framework Based on Torsion-Angle Sampling
User: thuxugang
protein-folding,OPUS-Fold3: a gradient-based protein all-atom folding and docking framework on TensorFlow
User: thuxugang
protein-folding,Example to fit parameters and run CG simulations using TorchMD and Schnet
Organization: torchmd
Home Page: http://torchmd.org
protein-folding,a package of Python modules and example scripts for experimenting with the two-dimensional HP lattice model of Dill and Chan.
User: vvoelz
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