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rnaimehaom's Projects

herg_toxicity icon herg_toxicity

Machine learning models to predict hERG-related toxicity of molecules & SHAP

hetionet icon hetionet

Hetionet: an integrative network of disease

hgnc icon hgnc

Download and import HGNC gene data into R

hgraph2graph icon hgraph2graph

Hierarchical Generation of Molecular Graphs using Structural Motifs

hierarchical-molecular-learning icon hierarchical-molecular-learning

Implementation of "Semi-supervised learning of hierarchical representations of molecules using neural message passing" (arXiv:1711.10168)

hightcond_polymer_iqspr icon hightcond_polymer_iqspr

R codes for generating candidates of novel polymers with high thermal conductivity using iqspr (R package)

hignn icon hignn

Code for "Hierarchical informative molecular representation learning for property prediction equipped with feature-wise attention"

hignn-1 icon hignn-1

Code for "Hierarchical and interactive informative molecular representation learning for enhanced property prediction with feature-wise attention mechanism"

hill-climbing-lstm icon hill-climbing-lstm

Implementation of hill-climbing for LSTM on sequences of string-based representation of chemicals.

hingefind icon hingefind

A recapitulation of hingefind.tcl (http://biomachina.org/disseminate/hingefind/hingefind.html) in python

hitpickv2 icon hitpickv2

A software to predict targets of chemical compounds

hivevo_reversion icon hivevo_reversion

Repository for the analysis and figures of Valentin Druelle's paper on HIV-1 reversion

hivwholeseq icon hivwholeseq

Data processing pipeline for HIV next-gen sequencing

hla icon hla

Reproducibility for 'MHC-I genotype restricts the oncogenic mutational landscape'.

hla-bind icon hla-bind

Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding prediction

hla-la icon hla-la

Fast HLA type inference from whole-genome data

hla_pipeline icon hla_pipeline

DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions

hmd icon hmd

HMD (Hyperfast Molecule Deriver) is a molecular structure generator.

hmdm icon hmdm

Homology models dataset for protein model quality assessment

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