rnaimehaom Goto Github PK

clusttraj

Python script that receives a molecular dynamics or Monte Carlo trajectory and performs agglomerative clustering to classify similar structures.

cmac_solpred_cosmo_rf

Code used in the generation of results for "A Unified AI Framework for Solubility Prediction Across Organic Solvents"

cmf

R package for finding a joint low-rank representation for a collection of matrices with shared row or column entities.

cmfrec

(Python, R, C) Collective (multi-view/multi-way) matrix factorization, including cold-start functionality (recommender systems, imputation, dimensionality reduction)

cmg

Controlled Molecule Generator for for Optimizing Multiple Chemical Properties

cmmrt

cmu-02750-peptide-design-using-bayesian-optimization

Spring 2021 - Automation of Scientific Research - course project

cner

A set of scripts developed for text tokenization and processing of the prediction results of naive-based chemical named entity recognition disclosed in the paper "Chemical named entity recognition in the texts of scientific publications using the naïve Bayes classifier approach"

cnn-based-inverse-design

All the codes and data used in "Inverse design of soft materials via a deep-learning-based evolutionary strategy", by G. M. Coli, E. Boattini, L. Filion, and M. Dijkstra.

cnn-chemicalidentifier

Chemical Identification from images using a CNN

cnn-toxicity-prediction

cnn_drugdesign

A code where I trained a machine learning (CNN) model using pytorch to predict the efficacy of a drug using pIC50 as a measure

cnvscope

CNVScope: Visually Exploring Copy Number Aberrations in Cancer Genomes

coarse-graining-auto-encoders

cocr

OCR/OCSR on handwritting ⏣/chemical-structural-formulas with YOLO & CRNN models.

code

Compilation of R and Python programming codes on the Data Professor YouTube channel.

codon-harmonizer

A different take on codon optimization

codon-opt

Solving a codon optimization problem by an ILP model (commercial solver)

codon-optimization

Use machine learning to design codon-optimized DNA sequences for increased protein expression.

codon-optimization-1

A neural based approach to the task of genetic codon optimization

codon-optimize

A Github action to codon optimize sequences.

codon-optimizer

Script to optimize protein-coding DNA sequences with natural codon usage

codon_optimization

https://www.nature.com/articles/s41598-020-74091-z#Tab1

codon_optimization-1

Using protein-per-mRNA differences among human tissues in codon optimization

codon_optimization-2

codonopt

Codonopt program is designed for codon optimization of protein sequences. The core of it based on the mathematical codon optimization proposed by Şen et al. (2020)

codonoptimization

Lowers GC% of sequence and avoids reducing codon frequency

codonoptimizer

DNA Codon Optimizer

codonoptimizer-1

Codon optimization script built on DNAChisel with RSCU calculation from the CAI module

codonshuffle