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bin's Issues

rename_contigs.py hangs

Hello there,
Thank you for making these scripts available to the public! I know a little python and am learning more from your scripts.
I am running rename_contigs.py and I noticed a typo in line 10 "contig". Anyways, after that correction though, the script is still hanging and I don't know enough yet about python to understand the code :(
Thank you for your time and talents.
Best Regards,
Rene

error with bam2bigwig

Hello,

When I run the bam2bigwig, I came across a problem.

`/tmp/pybedtools.0lJ1Nt.tmp is not case-sensitive sorted at line 1857598. Please use "sort -k1,1 -k2,2n" with LC_COLLATE=C, or bedSort and try again.

Time elapsed: 0:00:26.312967`

Any idea?

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