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Charles VAN GOETHEM

Info

Hi there, I'm Charles a bioinformatics engineer.

  • πŸ’» I'm currently working for 🐳 MoBiDiC at πŸ₯ CHU Montpellier
  • 🏫 I'm currently learning : flask, streamlit
  • 🎯 Fun fact : I already made a Robin Hood in darts (twice)
Where to find me

Github LinkedIn ResearchGate Twitter

Twitter TwitterMobidic

Skills

python perl R

mariaDB SQLite postgreSQL mongoDB

WDL SnakeMake

bash

Latex

html css javascript

OS & Tools

Linux Mac_OS

atom vim Rstudio

Git Github Overleaf Vercel

Django flask Pelican jinja

Stats

stats trophy graph

streak streak

Charles VAN GOETHEM's Projects

addaf icon addaf

Add Allelic Frequence (AF) for vcf from bcftools.

anacore icon anacore

Libraries for managing standard file formats and objects from NGS

bamclipper icon bamclipper

Remove primer sequence from BAM alignments by soft-clipping

bench_leon icon bench_leon

Comparison between Leon and Gzip for fastq compression

ggsashimi icon ggsashimi

Command-line tool for the visualization of splicing events across multiple samples

gitignore icon gitignore

A collection of useful .gitignore templates

mpa icon mpa

MoBiDiC Priorization Algorithm

outlyzer icon outlyzer

An efficient Variant-Caller to highlight low allele-frequency tumor mutations in a clinical practice

rnasplice icon rnasplice

rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis

sarek icon sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

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