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Kohsuke Onoue's Projects

answerly icon answerly

A Stack Overflow clone called Answerly from the book Building Django Web Applications

biofx_python icon biofx_python

Code for Mastering Python for Bioinformatics (O'Reilly, 2021, ISBN 9781098100889)

cnvkit icon cnvkit

Copy number variant detection from targeted DNA sequencing

dotfiles icon dotfiles

Config files for ZSH, Java, Ruby, Go, Editors, Terminals and more.

intro2r icon intro2r

Environment for Introduction to R for Genomic Data Analysis

mailape icon mailape

A mailing list manager called MailApe from the book Building Django Web Applications

mymdb icon mymdb

A basic Internet Movie Database (IMDB) clone called MyMDB from the book Building Django Web Applications

optitype icon optitype

Precision HLA typing from next-generation sequencing data

smcounter icon smcounter

smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very low allele fraction variants using targeted DNA sequencing and a novel molecular barcode-aware variant caller", BMC Genomics, 2017 18:5. https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-016-3425-4

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