acontrerasg Goto Github PK
Type: User
Bio: Biologist learning bioinformatics. Interested in the complex and repetitive part of genomes.
Twitter: aconga7
Location: MPI for biology Tübingen
acontrerasg's Projects
denovote-eval
Supporting repository for article "Software Evaluation for 'de novo' Detection of Transposons"
edta
Extensive de-novo TE Annotator
emojicode
😀😜🔂 World’s only programming language that’s bursting with emojis
helitron
TE annotation pipeline Helitron Scanner
insect_res
Scripts and data files used to study repetitive elements across insects in "The repetitive element landscape of insects"
maize_genomic_ecosystem
moir
Useful R functions for an easier life and analyses
nlr_cluster_survey
pafr
Read, manipulate and visualize 'Pairwise mApping Format' data in R
poptap
This repository contains a custom pipeline used to asses transposon absence polymorphisms (TAP) using short read illumina data.
public
repeatmasker
RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
scripts
Scripts for analysis used during the course
svs_in_1301_a.thaliana_lines
Structural Variation Calling Pipeline with NGS Data
tarvense_transposon_dynamics
vorkurs
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