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2020_wilk_covid

Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVID-19"

adegenet

adegenet: a R package for the multivariate analysis of genetic markers

amazona

Build ECommerce Website Like Amazon.com [React & Node & MongoDB]

amia_workshop_2017

Datasets and code for AMIA workshop 2017

ascii-autoencoder

TensorFlow autoencoder implementation with ASCII visualization of reconstruction progress

awesome-machine-learning

A curated list of awesome Machine Learning frameworks, libraries and software.

awesome-r

A curated list of awesome R packages, frameworks and software.

awesome-rnn

Recurrent Neural Network - A curated list of resources dedicated to RNN

bam2circos

Visualize your BAM alignments with Circos

battenberg

Battenberg R package for subclonal copynumber estimation

bin

My bioinfo toolbox

bio

General bioinformatics functions in Python

biopython-cn

Biopython Tutorial Chinese Translation

clustagen

Repo for app development

code

scripts

covidip_analysis

covidpbmc

Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection

cvdsba

The project data analysis code

ddocent

a bash pipeline for RAD sequencing

deeplearning-biology

A list of deep learning implementations in biology

dev-setup

macOS development environment setup: Easy-to-understand instructions with automated setup scripts for developer tools like Vim, Sublime Text, Bash, iTerm, Python data analysis, Spark, Hadoop MapReduce, AWS, Heroku, JavaScript web development, Android development, common data stores, and dev-based OS X defaults.

dl-hematology

Scripts used for the Deep Learning in Malaria

enaget

enaGet is a simple script for downloading ENA read data by accession number.

enveomics

Scripts and reference libraries at Kostas lab.

fasta

Perl scripts dealing with fasta files

fhir

FHIR Protocol Buffers

figtree-recolor

A script to re-color a FigTree saved Nexus file

file_conversions

Scripts to convert between file formats for various analyses

git-katas

A set of exercises for deliberate Git Practice

handong1587.github.io