Name: Inamul Hasan Madar
Type: User
Company: Korea University
Bio: OncoProteoGenomics,
NGS based Genomics,
Mass Spectrometry based Proteomics,
Precision Medicine,Computational Biology, Bioinformatics.
Location: Seoul, South Korea.
Blog: http://ionchem.korea.ac.kr
Inamul Hasan Madar's Projects
Set up a computer for Computational Biology
HMDB (http://www.hmdb.ca) compound database for PeakABro (https://github.com/stanstrup/PeakABro)
Compartmentalized Protein-Protein Interaction database (Not official repo)
Rigor, Reproducibility, Transparency, and Reagent Validity for Computational Biologists
Bioinformatics containers
Computational reproducibility using Continuous Integration to produce verifiable end-to-end runs of scientific analysis.
A simple phylogenetic tree building example of Continuous Analysis
Example of how continuous analysis can be used for RNA-Seq differential expression.
Python CLI to convert between zero and one based genomic coordinate systems
Co-occurring variant analyzer
R package for Combinatorial OPTimization based Enrichment Analysis
Shiny based application for correlation analysis
NGS tools for Conputational Oncology group in DKFZ
Count (whole genome) alignments that happen to map to repeats. This allows multimappers to multiple repeats.
Program and some material for EMBO Practical Course on computational analysis of protein-protein interactions: From sequences to networks, taking place at TGAC, Norwich, UK, Sep-Oct 2015
A database system for managing training course bookings
Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1
Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE
Cancer Predisposition Sequencing Reporter (CPSR) - prioritization of cancer germline variants
Python packaging for CPTAC data
Obtain submitted reads and clinical info associated with CPTAC3 cases
Chromatographic Peakpicker -- Fork of the Crawdad code from proteowizard using CMake build system