Name: Inamul Hasan Madar
Type: User
Company: Korea University
Bio: OncoProteoGenomics,
NGS based Genomics,
Mass Spectrometry based Proteomics,
Precision Medicine,Computational Biology, Bioinformatics.
Location: Seoul, South Korea.
Blog: http://ionchem.korea.ac.kr
Inamul Hasan Madar's Projects
By modelling aneuploidy with interleaving branching processes we can make a decision about whether or not genome doubling occurred. We can also label each event as being pre or post GD.
Provides SVG View for Genome Features rendered with the Apollo Track Web Service from JBrowse data React Component
Utilities for manipulating chromosome and other 'seqname' identifiers
GenomeTools genome analysis system.
The Genome U-Plot is a JavaScript tool to visualize chromosomal abnormalities in the Human Genome using a U-shape layout.
Course Material and stuff
Random python genomic scripts
Interconvert between various common genomic data file formats
File formats for Genomics data
Provide R access to the NCI Genomic Data Commons portal.
python script for calculating expression values from RNA-seq
software for checking the virus sequences in fastq files
Make personal protein databases using next generation sequencing data.
Genome data visualizations
Gene data analysis
Create beautiful generative geometric background images from a string.
A Web App for analysing GEO (Gene Expression) data
Gene Expression Profiles to Pathway Expression Profiles conversion and analysis
parse command-line arguments and simple variable interpolation in R
Unix, R and python tools for genomics and data science
Convert, explore, and manipulate GFF and GTF files (used in bioinformatics) using a sqlite-based approach
GFusion is a software package to detect fusion genes using RNA-Seq data
R package that extends ggplot2