Name: Inamul Hasan Madar
Type: User
Company: Korea University
Bio: OncoProteoGenomics,
NGS based Genomics,
Mass Spectrometry based Proteomics,
Precision Medicine,Computational Biology, Bioinformatics.
Location: Seoul, South Korea.
Blog: http://ionchem.korea.ac.kr
Inamul Hasan Madar's Projects
NEw Kmer Tools for Analysis of Reads.
NeoFlow is a standalone tool developed based on Nextflow and Docker and is developed for tumor neoantigens identification using DNA-Seq, RNA-Seq and MS/MS data.
A data integration framework that allows simultaneous presentation of large-scale experimental and annotation data from various sources in the context of a biological network to facilitate data visualization, analysis, interpretation, and hypothesis generation.
nextrnai - a software package for the design of RNAi libraries
Code and files for the main nf-core website >>>
Tools for producing pseudo-cgh of next-generation sequencing data
Nextflow Small RNA Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.
Development fork. Head fork here >>>
Automation of the processing of NextGen Sequencing data @ CRUK-CI using Genologics Clarity LiMS
Filters for false-positive mutation calls in NGS
A course on Analysing Next Generation (/High Throughput etc..) Sequencing data using Bioconductor
NGS-pipe: next-generation sequencing pipelines for precision oncology
By study this, it won't be costly or time-consuming to customize a NGS data analysis pipeline
install packages for ngs training and get example data
Software Suite to calculate metrics in FASTQ/BAM/VCF files and generate visual reports using python scripts
(WIP!) NGS Nextflow Pipelines : Alignment, Variant Calling, GATK Best Practices
Exome/Capture/RNASeq Pipeline Implementation using snakemake
Tutorial test
NGS pipeline
Software to automate tasks for performing biowulf2 analyses remotely from a different server.
The nimble & robust variant annotator
Python and C++ code for reading and writing genomics data.
A tutorial on using Open Biological and Biomedical Ontologies (OBO)
Open Drug Discovery Toolkit
ODG: Omics Database Generator - Integration toolkit for -omics data
A tool for large scale omics datasets evaluation
Javascript library for visualizing OncoGrids and related tracks
Cancer-omics Data Integration
oncotator singularity