yikun / bioconda-utils Goto Github PK

git clone https://github.com/bioconda/bioconda-utils.git
cd bioconda-utils
conda install --file bioconda_utils/bioconda_utils-requirements.txt -c conda-forge -c bioconda
python setup.py install

PackagesNotFoundError: The following packages are not available from current channels:

  - involucro=1.1
  - skopeo==0.1.35

bioconda-utils build --docker --mulled-test --packages bioconductor-a4 --force

16:09:49 BIOCONDA INFO FILTER: not building bioconductor-a4-1.46.0-r42hdfd78af_0.tar.bz2 because it is in channel(s) and it is not forced.
16:09:49 BIOCONDA INFO BUILD START recipes/bioconductor-a4
Updating build index: /root/yikun/miniconda/envs/bioconda/conda-bld
conda-forge/osx: 205MB [00:24, 12.2MB/s]
16:09:50 BIOCONDA INFO (COMMAND) docker run -t --net host --rm -v /tmp/tmp2dmzrjje/build_script.bash:/opt/build_script.bash -v /root/yikun/miniconda/envs/bioconda/conda-bld/:/opt/host-conda-bld -v /root/bio/bioconda-recipes/recipes/bioconductor-a4:/opt/recipe -e LANG=en_US.UTF-8 -e HOST_USER_ID=0 quay.io/bioconda/bioconda-utils-build-env-cos7:1.5.1_0.g69459e6.dirty /bin/bash /opt/build_script.bash
16:09:50 BIOCONDA INFO (ERR) Unable to find image 'quay.io/bioconda/bioconda-utils-build-env-cos7:1.5.1_0.g69459e6.dirty' locally
16:09:54 BIOCONDA INFO (ERR) docker: Error response from daemon: manifest for quay.io/bioconda/bioconda-utils-build-env-cos7:1.5.1_0.g69459e6.dirty not found: manifest unknown: manifest unknown.
16:09:54 BIOCONDA INFO (ERR) See 'docker run --help'.
16:09:54 BIOCONDA ERROR COMMAND FAILED (exited with 125): docker run -t --net host --rm -v /tmp/tmp2dmzrjje/build_script.bash:/opt/build_script.bash -v /root/yikun/miniconda/envs/bioconda/conda-bld/:/opt/host-conda-bld -v /root/bio/bioconda-recipes/recipes/bioconductor-a4:/opt/recipe -e LANG=en_US.UTF-8 -e HOST_USER_ID=0 quay.io/bioconda/bioconda-utils-build-env-cos7:1.5.1_0.g69459e6.dirty /bin/bash /opt/build_script.bash

16:09:54 BIOCONDA ERROR BUILD FAILED recipes/bioconductor-a4
16:09:54 BIOCONDA INFO (COMMAND) conda build purge
16:09:56 BIOCONDA ERROR BUILD SUMMARY: of 1 recipes, 1 failed and 0 were skipped. Details of recipes and environments follow.
16:09:56 BIOCONDA ERROR BUILD SUMMARY: FAILED recipe recipes/bioconductor-a4