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Name: David Laehnemann
Type: User
Name: David Laehnemann
Type: User
A set of tools to create plotting files from subset counts in banker's sequenc order. I.e. helper scripts for the visualisation of count data across all possible subsets of a sample set.
This is my own personal development repository for BCFtools. Check out the main repository at: https://github.com/samtools/bcftools
Conda recipes for the bioconda channel.
Utilities for building and managing bioconda recipes
The Rust package manager
A conda-smithy repository for coin-or-cbc.
Rust bindings to the CoinOR CBC MILP Solveur using the C API.
A conda-smithy repository for coincbc.
create long read (Nanopore with NanoSim) and short read (Illumina with Circle-Map) testing data for ecDNA analysis workflows
A Snakemake workflow for (reproducibly) creating a QuantSeq 3' mRNA testing dataset that is both small enough to run in standard continuous integration testing environments, and large enough to produce (some reasonably) meaningful results.
a mini snakemake workflow to produce structural variant testing dataset small enough for CI systems, but large enough to be meaningful
A tool to create visual HTML reports from collections of CSV/TSV tables
Tools to process and analyze deep sequencing data.
A little snakemake workflow to evaluate the varlociraptor subcommand `estimate contamination`.
A quick introduction into ggplot2, with ioslides produced from Rmarkdown
This is the development site for Hands-On Programming with R, a book that teaches how to program in R, with hands-on examples. Read the book at https://rstudio-education.github.io/hopr.
Specifications of SAM/BAM and related high-throughput sequencing file formats
C library for high-throughput sequencing data formats
Annotation of VCF variants with functional impact and from databases (executable+library)
Snakemake profile for running jobs on an LSF cluster
Various media related scripts
Nanopore sequence read simulator
Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors
Version 2 of the PROSIC caller for somatic variants.
Comprehensive list of color palettes available in r
R for data science: a book
snakemake workflow to determine conservative fold changes between transcriptomic samples when no biological replicates are available
A workflow for RNA-seq differential expression analysis based on Kallisto and Sleuth.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.