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Marcel Martin's Projects

compression icon compression

playground for compression experiments and benchmarks

cutadapt icon cutadapt

Cutadapt removes adapter sequences from sequencing reads

dnaio icon dnaio

Efficiently read and write sequencing data from Python

mypy icon mypy

Optional static typing for Python

pysam icon pysam

Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.

snakemake icon snakemake

This is the development home of the workflow management system Snakemake. For general information, see

staged-recipes icon staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

wfa2-lib icon wfa2-lib

WFA2-lib: Wavefront alignment algorithm library v2

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