Christian Brueffer's Projects
BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy visualization of commonly used DNA-seq capture based methods.
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
Website for #BCC2020
A powerful toolset for genome arithmetic.
Utilities for building and managing bioconda recipes
Fork of the official biopython repository.
Source of biopython.org website, migrated from MediaWiki
An ultrafast memory-efficient short read aligner
A fast and sensitive gapped read aligner
SV detection from paired end reads mapping
cbrueffer Github README
Personal website.
Miscellaneous collection of Python and R scripts for processing Iso-Seq data
CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria
Circular visualization in R
CloudBioLinux: configure virtual (or real) machines with tools for biological analyses
classification of higher-order structural variants from breakpoint data
A conda-smithy repository for conda-forge-pinning.
Cleaning up Conda r-packages
OPNsense GUI, API and systems backend
Slides, figures, and other material for teaching using tracing and observability on FreeBSD
A collaborative review of the emerging literature on diagnostics and treatments related to COVID-19
CrossMap is a python program to lift over genome coordinates from one genome version to another.
A collaboratively written review paper on deep learning, genomics, and precision medicine
OPNsense documentation
Dot files