metagenlab Goto Github PK
Type: Organization
Type: Organization
snakemake-powered cli to download genomes using NCBI datasets
Nextflow pipeline to benchmark two shotgun metagenomic communities simulators
The Extended BioV suite of programs (fully written in Python)
chlamdb.ch website code
Build a phylogeny with FastTree based on a concatenated alignment of 103 marker genes identified with checkM.
Pipelines dealing with high throughput sequencing data for microbiology diagnostic procedures. Documentation available at http://metagenlabdiag-pipelines.readthedocs.io/en/latest/ and Docker images at https://hub.docker.com/r/metagenlab/diag_pipelines/.
Extract MAG of a specific taxon of interest from metagenome assembly
Plot bacterial gene maps and genome comparison plots from command line with genoPlotR and GenomeDiagram
Snakemake pipeline for simulating shotgun metagenomic samples
Snakemake pipeline for shotgun metagenomics
Forking MultiQC in order to add to the parsing of qualimap results the extraction of the "General Error Rate". Will PR back there once performed
Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments
Rnaseq pipeline
Corrected version of simulate_PCR (https://doi.org/10.1186/1471-2105-15-237)
zAMP is a bioinformatic pipeline designed for convenient, reproducible and scalable amplicon-based metagenomics
zDB: comparative bacterial genomics made easy
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.