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ansible-role-minknow-guppy-gpu

Ansible role to install and configure ONT MinKNOW with GPU support when basecalling using guppy

bamstats

A command line tool to compute mapping statistics from a BAM file

beacon-v2

Unified repository for the GA4GH Beacon v2 API standard

biogenome-portal

Biogenome data portal

bioproject-genome-tracker

Retrieve all the INSDC public assemblies under a BioProject umbrella

blast2gff

compute series of Similarity_to_protein regions from one given set of HSPs (BlastX)

chip-nf

An automated ChIP-seq pipeline using Nextfow

chipseq_pipeline

AQUAS TF and histone ChIP-seq pipeline

cluster_job

Wrapper to submit jobs to a SGE cluster. Can split large jobs in clusters or submit array jobs.

crispeta

A really flexible tool to obtain CRISPR paired gRNAs on desired regions of a genome

deepfryer

DeepFryer - Deep Learning Framework for Your Expression RNA-seq data

epiraction

fa-nf

Functional annotation pipeline for proteins from non-model organisms implemented in Nextflow

gencode-cls-master-table

Results of the GENCODE pipeline to produce a collection of full length high quality transcripts

gene-predictions-web

Web portal for gene prediction data

geneid

Predict genic elements as splice sites, exons or genes, along eukaryotic DNA sequences

geneid-param-resolver

Given a taxID returns the closest parameter file contained in the repository: https://github.com/guigolab/geneid-parameter-files

geneid-parameter-files

Repo with all the geneid parameter files

geneidx

Nextflow pipeline for genome annotation of protein-coding genes

ggsashimi

Command-line tool for the visualization of splicing events across multiple samples

git-tech-session

Lab tech session on Git, GiHub and GitHub Actions

git-tlm

Technical Lab Metting - May 29, 2019 - Emilio Palumbo

grape-nf

An automated RNA-seq pipeline using Nextflow

grape-ngs-slides

GRAPE presentations

hugo-future-imperfect-slim

Multilingual Blogging Theme for Hugo | Check the Wiki for Documentation

ihec-assay-standards

This repo is for code and documentation associated with the ihec-assay-standards working group

ipsa-nf

Integrative Pipeline for Splicing Analyses (IPSA) in Nextflow

jbrowse-plugin-refget-api

A JBrowse 2 plugin to access servers implementing the refget API of GA4GH

lncatlas

An easy to use web-based visualization tool to obtain useful information about expression localization of long non-coding class of RNAs

lyric

Long RNA-seq analysis workflow