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ahasverus

Investigations in Aging

anno

Anno is a variant annotation tool

basiccirseqpipeline

basr

Pipeline for Ancestral State Reconstruction

bio3d_nma

Scripts for normal mode analysis (pkg: bio3d) and downstream plotting in R

bornite

cirquestdsv

Annotation and Analysis of Deep Sequencing Variants from CirSeq

cirseq

data_wrangling

denv

Dengue Modeling HQ

dolan_taguwa_dengue_2020

dotsplot

Quick script for generating dot plots from bio sequence data

ectv_analysis

feeling-responsive

»Feeling Responsive« is a free flexible theme for Jekyll built on Foundation framework. You can use it for your company site, as a portfolio or as a blog.

haploclique

Viral quasispecies assembly via maximal clique finding. A method to reconstruct viral haplotypes and detect large insertions and deletions from NGS data.

mnsc-analysis_vonk-et-al

RNAseq analysis of RNAseq data from differentiating murine NSCs

phylotorials

Nascent step-by-step phylogenetics instructions and tutorials.

poreplex

A versatile sequenced read processor for nanopore direct RNA sequencing

pymolmapper

Collection of scripts for mapping values from R onto pdb files as b-factor. Requires `Rpdb` and `bio3d` packages.

pyrite

Python utilities

qveu

QVEU webpage

qveu_code

Code generated in the QVEU

rnaseq_pipe

RNAseq pipeline examples

rutile

Useful r scripts

sarscov2

Collection of data and scripts for Andino lab efforts in coronavirus

spine

steve

Search Tools for EVEs: EVE search, annotation and comparison tools.

viral_lark_analysis

xiaoetal_2017_analysis

Analysis for Nat. Comm. Xiao, Dolan et al.