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k8s-environment-orcestra

kulgap

KuLGap is a web application that allows users to calculate KuLGaP as well as several other measurements of response to anti-tumour therapy.

l1k_metasig

lineplotdigitizer

longarray

longArray Example

med-imagetools

Transparent and reproducible medical image processing pipelines in Python.

merida

C++ implementation of our MERIDA algorithm for drug sensitivity prediction.

merida_snakemake_pipeline

Pipeline implementing the MERIDA logical modelling method using Snakemake to dispatch hyperparmeter tuning on a Slurm based HPC cluster.

metabias

A repository to study the impact of violating the independence assumption in meta-analysis on biomarker discovery

metagx

Scripts to perform meta-analysis of cancer gene expression datasets

metagxbreast

metagxdata

Analysis pipeline for the MetaGxData package compedium (version 2.3)

metagxdata-pipeline

MetaGxData Packages Compedium

metagxovarian

metagxpancreas

mm2s

mm2sdata

models

mrmre

mRMRe is a package for Parallelized Minimum Redundancy, Maximum Relevance (mRMR) Ensemble Feature Selection

multivariate-alignment

mva_dnf

Computational pharmacogenomics screen identifies synergistic statin-compound combinations as anti-breast cancer therapies

mycg9a

nci-pdmr-data

netinfpriors

R code accompanying Olsen et al., Frontiers In Genetics, 2014

nnunet_segmentation_model_benchmark

npm1-aml

orcestra

ORCESTRA is a new web application that enables users to search, request and manage pharmacogenomic datasets (PSets).

ovcsubtypes

pdac-subtyping-drugresponse

pdacsurv

Meta-analysis of prognostic models for PDAC