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BHKLAB's Projects

kulgap icon kulgap

KuLGap is a web application that allows users to calculate KuLGaP as well as several other measurements of response to anti-tumour therapy.

med-imagetools icon med-imagetools

Transparent and reproducible medical image processing pipelines in Python.

merida icon merida

C++ implementation of our MERIDA algorithm for drug sensitivity prediction.

merida_snakemake_pipeline icon merida_snakemake_pipeline

Pipeline implementing the MERIDA logical modelling method using Snakemake to dispatch hyperparmeter tuning on a Slurm based HPC cluster.

metabias icon metabias

A repository to study the impact of violating the independence assumption in meta-analysis on biomarker discovery

metagx icon metagx

Scripts to perform meta-analysis of cancer gene expression datasets

metagxdata icon metagxdata

Analysis pipeline for the MetaGxData package compedium (version 2.3)

mrmre icon mrmre

mRMRe is a package for Parallelized Minimum Redundancy, Maximum Relevance (mRMR) Ensemble Feature Selection

mva_dnf icon mva_dnf

Computational pharmacogenomics screen identifies synergistic statin-compound combinations as anti-breast cancer therapies

netinfpriors icon netinfpriors

R code accompanying Olsen et al., Frontiers In Genetics, 2014

orcestra icon orcestra

ORCESTRA is a new web application that enables users to search, request and manage pharmacogenomic datasets (PSets).

pdacsurv icon pdacsurv

Meta-analysis of prognostic models for PDAC

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