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rpharmacodb

R Interface for PharmacoDB

rpharmacodi

R code which enchances the PharmacoDI Python package.

scanner-dependency-and-hpv-prediction

sign-neoaltto

skinfibrosis

Skin Fibrosis

snakemake

snakemake-kubernetes-api

Flask API to be used as the new data processing layer of ORCESTRA.

statinemt

Project to regenerate the pharmacogenomics analysis in this paper: "Statin-induced cancer cell death can be mechanistically uncoupled from prenylation of RAS family proteins"

statinsmm

survcomp

R package for performance assessment and comparison for survival analysis

synergxdb

SYNERGxDB is a comprehensive database to explore synergistic drug combinations for biomarker discovery.

tdgea

Time-dependent gene expression Analysis

testpkg

tggates

tnbc_bay-876

tnbc_prmt1i

toxicodb-web

ToxicoDB is a database of curated toxicogenomics datasets that provides convenient data summary and visualization to mine these complex data. Users can find drug and gene annotations, visualize differential gene expression and enriched pathways within datasets for drug of interest.

toxicogx

A statistical package, in R, used in cancer research to analyze toxicity of drugs on cancer gene expression across large-scale toxicogenomic datasets.

toxicosetpipeline

Contains the code necessary to build all ToxicoSet objects from raw data.

uhn-radcure-challenge

Official repository of the 2020 UHN RADCURE challenge.

wci

Modified Concordance Index for pharmacological readout

wci-libraries

Shared C code libraries for computing the wCI

wci_manuscript

xeva

XEnograft Visualization & Analysis

xevadb

XevaDB is a database for PDX pharmacogenomic data.

xevadi

The XevaDI is a python package that transforms the CSV files from the Xeva set to create the database table for XevaDB.

zero_interaction_potency-reproduction

Repository reproducing the original ZIP paper: Yadav, B., et al . (2015). Searching for Drug Synergy in Complex Dose–Response Landscapes Using an Interaction Potency Model. DOI: https://doi.org/10.1016/j.csbj.2015.09.001