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kulgap's Introduction

KuLGaP

KuLGap is a web application that allows users to calculate KuLGaP as well as several other measurements of response to anti-tumour therapy.

Setup Instructions

  • Clone the repo
git clone [email protected]:bhklab/KuLGaP.git
cd KuLGap
  • In the project directory, install all the server dependencies using `pip install -r requirements.txt
  • To start the server run this command flask run
  • Start the client (development mode) by running npm start
  • Open http://localhost:3000 to view it in the browser.

Dependencies

  • React
  • React-Router
  • Express
  • Knex
  • Body-parser

Dev Dependenices

  • Nodemon
  • Eslint

Build Instructions

cd client && npm build

Builds the app for production to the build folder. It correctly bundles React in production mode and optimizes the build for the best performance.

Server

kulgap's People

Contributors

bhaibeka avatar bitvoid01 avatar chuntul avatar deventorum avatar gangeshberi avatar

Watchers

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kulgap's Issues

csv input: missing data in the middle

Hi,

It seems that this analysis doesn't support input csv with missing volume measurements (in the form of "" in csv file) in the middle before truncation and doesn't give an error warning. The growth curve generated suggested that each non-empty volume was assigned to a time point one by one while skipping empty ones, leading to wrong time-volume matches and different stats results. Or is there anything I'm missing that supports missing data but needs a different format?

Thanks!

Internal server errors

It would be great to receive some info about why the data is not in the correct format. I had issues first because I had put the treatment time in weeks (not days), then because the data was in scientific number format, but the software simply returned the same error so it was not clear what was wrong.

I guess you could also have a specific list of requirements in 'documentation' (it does mention that the treatment time should be in 'days') but it would be easier if the error message could give more information directly. The attached file is giving the error message, but I can't see what's wrong with it (apologies if I'm missing something simple!).

Fantastic app/algorithm though, well done!

x.csv

KuLGaP online tool data visualisation discrepancy

Using the example dataset provided with the online analysis tool, there is a discrepancy with how the data are plotted. It appears to be to do with whether the dataset for each individual is truncated before the maximum timepoint or not. See the attached file which compares the example data plotted in Excel with the graph generated by the online tool.

Please could you investigate to see whether this anomaly relates just to the data visualisation, or also to the statistical analysis?

Kind regards,
Gill Mundin

KuLGaP plots vs Excel plots
.

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