Topic: flow-cytometry Goto Github
Some thing interesting about flow-cytometry
Some thing interesting about flow-cytometry
flow-cytometry,cytoDiv is a R function that calculates ecological diversity indices for a microbial community based on its bio-optical properties measured at the single cell level by flow cytometry. The indices express the organization and structure of a community, its richness in physiological and genetic variations. The equations used to calculate the indices are described in Li, W. 1997 Limnology & Oceanography 42, 874:880
Organization: armbrustlab
flow-cytometry,This repository extends scanpy to handle flow and mass cytometry data.
Organization: buettnerlab
flow-cytometry,Immunology Informatics - Big Data Analysis in Immunology - Tutorials
User: burkesquires
flow-cytometry,A data-centric flow/mass cytometry automated analysis framework
User: burtonrj
Home Page: https://cytopy.readthedocs.io/en/latest/
flow-cytometry,In-browser utility for validating FCS file specification compliance
Organization: cellengine
Home Page: https://cellengine.github.io/fcs-validator/
flow-cytometry,Plugin Gating Functions for openCyto
User: dillonhammill
flow-cytometry,Size-structured matrix population model for SeaFlow data
User: fribalet
Home Page: https://armbrustlab.ocean.washington.edu/tools/seaflow/
flow-cytometry,Specialized clinical laboratory static file system manager.
User: gcampuzano14
flow-cytometry,Tools for Imaging Flow Cytometry
User: gitdemont
flow-cytometry,Data for Imaging Flow Cytometry
User: gitdemont
flow-cytometry,Image Processing tools for Imaging Flow Cytometry
User: gitdemont
flow-cytometry,An R Interactive Shiny Application for the Analysis of Imaging and Conventional Flow Cytometry
User: gitdemont
flow-cytometry,MATLAB class to apply the logicle transformation to a matrix and provide axes labels.
User: harleyday
Home Page: https://harleyday.github.io/logicleTransform.m/
flow-cytometry,A computational toolkit in R for the integration, exploration, and analysis of high-dimensional single-cell cytometry and imaging data.
Organization: immunedynamics
Home Page: https://immunedynamics.github.io/spectre/
flow-cytometry,Shiny Modules for visualizing flow cytometry data
User: laderast
Home Page: http://laderast.github.io/flowDashboard
flow-cytometry,Flow/Mass Cytometry Gating via Spatial Kernel Density Estimation
Organization: lance-waller-lab
flow-cytometry,Huge-scale, high-performance flow cytometry clustering in Julia
Organization: lcsb-biocore
Home Page: http://git.io/GigaSOM.jl
flow-cytometry,An Open-Source Software Package for Performing High-Throughput Batch Analysis of Flow Cytometry Data
Organization: leonardlab
Home Page: https://elliberes.me/pyflowbat-docs
flow-cytometry,R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data
User: lmweber
flow-cytometry,Low-level Flow Cytometry Standard (FCS) file serializer/deserializer
User: martindisch
flow-cytometry,CITEViz: Replicating the Interactive Flow Cytometry Workflow in CITE-Seq
Organization: maxsonbraunlab
Home Page: https://maxsonbraunlab.github.io/CITEViz/
flow-cytometry,Novel ultrafast suite for high-throughput & high-content multiparameter screening as in drug discovery. It has unique modules for QC, bias correction, similarity measurement, clustering and visualization. It can process hundreds of samples with many markers in a few hours not days & circumvents bath effect. It couples with any plate reader.
User: morchalabi
Home Page: https://github.com/morchalabi/COMPARE-suite/wiki/COMPARE-Suite
flow-cytometry,Javascript / node.js code to read FCS flow cytometry data
User: morganconrad
flow-cytometry,FauxFlow - Analyze Single Cell Genomics Data in a Flow Cytometry Paradigm
User: nathansiemers
flow-cytometry,Code base for the Grant, Morales-Nebreda, and Markov et al., “Circuits between infected macrophages and T cells in SARS-CoV-2 pneumonia” Nature (2021) paper
Organization: nupulmonary
Home Page: https://www.nature.com/articles/s41586-020-03148-w
flow-cytometry,R package to cluster single-cell data and generate features that can be used for model building
Organization: parkerici
flow-cytometry,R package for interactive visualization and analysis of single-cell data
Organization: parkerici
flow-cytometry,R package for pre-processing of mass and flow cytometry data
Organization: parkerici
flow-cytometry,R package for analysis of single-cell data using graphs
Organization: parkerici
flow-cytometry,Basic functionality to create circos plot that shows concurrent positivity of flow cytometry markers.
Organization: pathology-sandbox
flow-cytometry,An R package for flow cytometry histogram analysis
User: plantarum
flow-cytometry,This repo is deprecated. Use https://github.com/plantarum/flowPloidy instead!
User: plantarum
flow-cytometry,Repository accompanying the paper "Flow cytometric single-cell identification of populations in synthetic bacterial communities".
User: prubbens
flow-cytometry,R package offering functionality for the advanced analysis of microbial flow cytometry data
User: rprops
flow-cytometry,Framework for image and flow cytometry analysis
User: schienstockd
Home Page: https://github.com/schienstockd/ceceliaDocker
flow-cytometry,Conversion from light scattering measured by SeaFlow to carbon per cell
Organization: seaflow-uw
flow-cytometry,Conversion from light scattering measured by SeaFlow to cell diameter
Organization: seaflow-uw
flow-cytometry,Popcycle is an R package that offers reproducible analytical tools to analyze flow cytometry data collected by SeaFlow
Organization: seaflow-uw
Home Page: https://seaflow.netlify.com
flow-cytometry,Python package with library and CLI tool for analyzing SeaFlow data
Organization: seaflow-uw
flow-cytometry,"Silicates Eroded under Simulated Martian Conditions Effectively Kill Bacteria - A Challenge for Life on Mars" published in Frontiers in Microbiology (2017)
User: silasboyenissen
Home Page: https://www.frontiersin.org/articles/10.3389/fmicb.2017.01709/full
flow-cytometry,🧫 Read Flow Cytometry Standard (FCS) files in Julia
User: tlnagy
flow-cytometry,An R package for the processing of plate reader and flow cytometry data. This includes: normalisation and calibration of plate reader data, and removing debris and doublets and calibration of flow cytometry data.
Organization: ucl-cssb
flow-cytometry,A Python library for reading and writing Flow Cytometry Standard (FCS) files
User: whitews
Home Page: https://flowio.readthedocs.io
flow-cytometry,A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces
User: whitews
Home Page: https://flowkit.readthedocs.io
flow-cytometry,FlowUtils is a Python package containing various utility functions related to flow cytometry analysis, primarily focused on compensation and transformation tasks commonly used within the flow community.
User: whitews
Home Page: https://flowutils.readthedocs.io
flow-cytometry,A collection of visualization examples for Flow Cytometry Data
User: whitews
flow-cytometry,Django-based Repository for Flow Cytometry Data
User: whitews
flow-cytometry,A library for analyzing flow cytometry data
User: xwu
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