Topic: codon-usage Goto Github
Some thing interesting about codon-usage
Some thing interesting about codon-usage
codon-usage,Python package of codon usage bias analysis tools
User: alondmnt
Home Page: https://codon-bias.readthedocs.io
codon-usage,MATLAB package for codon usage bias and NGS analysis
User: alondmnt
codon-usage,A tool to translate a given protein sequence into a DNA sequence based on a constructed codon use table for a target heterologous host, Nicotiana benthamiana.
User: anchitaaghag
codon-usage,Source code to accompany manuscript entitled "Gaussian-distributed codon frequencies of genomes" (Khomtchouk & Nonner, 2019)
User: bohdan-khomtchouk
codon-usage,A tool for dynamically calculating the codon usage bias in bacterial genomes and querying of a database for Codon Bias statistical analysis
User: briandehlinger
codon-usage,A script for codon harmonization.
User: chaupka
codon-usage,Calculate CUB indices and optimize the gene sequence to enhance expression
User: dyyvgug
Home Page: https://www.codonbias.cn
codon-usage,Calculating AA frequencies from codon design, and vice versa
User: dzhang32
Home Page: https://dzhang32.github.io/codino/
codon-usage,:bar_chart: Codon usage tables in code-friendly format + Python bindings
Organization: edinburgh-genome-foundry
codon-usage,Toolkit to analyze codon usage bias
User: enovoa
codon-usage,A Novel Approach to Codon Optimization Based on Machine Learning and Genetic Algorithm
User: gumgo91
codon-usage,Currently, we don't have the bandwidth to update and maintain the Python version; please use the R version instead. (https://github.com/mt1022/cubar)
User: gxelab
Home Page: https://gxelab.github.io/cubat/
codon-usage,π― Generate DNA sequences with specified amino acid, codon, and k-mer frequencies
Organization: iqtlabs
Home Page: http://freqgen.readthedocs.io/
codon-usage,Analysis of codon positional dependency
User: juanvillada
codon-usage,Research on position-dependent hydrogen bonds per codon
User: juanvillada
codon-usage,codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, phage, etc.) relative to the full genome.
Organization: kalan-lab
codon-usage,A Go package for designing DNA.
User: koeng101
codon-usage,Predicting Taxonomic Identity and Genetic Composition of Codon Usage Bias Levels Using Deep Learning Models
User: lennart2001
Home Page: https://doi.org/10.1109/BigData55660.2022.10020679
codon-usage,Comparative analysis pipeline of Population's Codon Usage
User: lindechun
codon-usage,Taxonomic Identity PREdiction: homework for Machine Learning Course 2021 (MSc Bioinformatics for Computational Genomics)
User: mariachiaragrieco
codon-usage,Codonopt program is designed for codon optimization of protein sequences. The core of it based on the mathematical codon optimization proposed by Εen et al. (2020)
User: maximato
codon-usage,It is simple codon optimiser by using codon bias and usage
User: mpurushothamrao
codon-usage,R Package for Codon Usage Bias Analysis
User: mt1022
Home Page: https://mt1022.github.io/cubar/
codon-usage,A tool with nice GUI to visualize the codon usage frequencies in whole genomes
Organization: ostash-group
codon-usage,Methods and data to reproduce the investigation on the adaptive trait found in the genes of the methane oxidation metabolic module of type Ia methanotrophs
Organization: pleelab
codon-usage,Python3 implementation of commonly used codon usage statistics
User: rhondene
codon-usage,Codon decoder, taking a input from user, then the program will display the type protein created by the codon
User: samdarshihawk
codon-usage,A codon pair score/codon pair bias calculator
User: smsaladi
codon-usage,A slimmed down fork of CodonW with python bindings
User: smsaladi
codon-usage,A python project for analysis of codon usage for gene or genome analysis
User: souradiptoc
Home Page: https://github.com/SouradiptoC/CodonU
codon-usage,CUBseq analyses codon usage bias from RNA-seq data, producing robust CUB estimates that account for variants transcriptome-wide and in highly expressed genes.
Organization: stracquadaniolab
codon-usage,Simple Python program to perform codon optimization or heterology calculations.
User: tdseher
codon-usage,Analysis of codon usage in oncogene families.
User: webermarcolivier
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