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Nesterenko Maksim's Projects

biotextutils icon biotextutils

It contains some scripts for working with biological sequences. It can translate DNA to proteins, extract specific fragment from alignment.

codonopt icon codonopt

Codonopt program is designed for codon optimization of protein sequences. The core of it based on the mathematical codon optimization proposed by Şen et al. (2020)

fstage icon fstage

Project for calculating of confidence level of aligning

pcran icon pcran

The PCRan program is designed to process raw PCR thermocycler data or fit prepared PCR data by line (standard line plotting).

pdban icon pdban

Project for analysis of protein structures in .pdb file format. It calculates some structure parameters and can compare two structures by calculating the RMSD.

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