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MRC Centre for Global Infectious Disease Analysis's Projects

plasmomapi icon plasmomapi

Mapping Plasmodium Spatial Connectivity from Genetic Data

plasmomapi_submission icon plasmomapi_submission

Holds scripts etc. needed to reproduce all figures and tables from the PlasmoMAPI submission.

plasmosim icon plasmosim

A basic Plasmodium simulator. Contains functions to simulate epidemiological and genetic data from a simple model of Plasmodium falciparum transmission.

ppmcmc icon ppmcmc

🦟✨⛓🎲 Plasmodium particle Markov chain chain Monte Carlo

provisionr icon provisionr

:package::package::arrow_right::classical_building: Provision a library of R packages

queuer icon queuer

:walking::walking::walking: Prototype general queue

reactidd icon reactidd

This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (REACT) study. It includes both code and data. For code-related enquiries please contact Oliver Eales: [email protected]

recon_tb_to_odin icon recon_tb_to_odin

Re-writing the RECON TB practical (https://www.reconlearn.org/post/practical-tb.html) to run in the odin web interface

referenced-ti icon referenced-ti

Code for the referenced thermodynamic integration (TI) method of calculating model evidence

rincewind icon rincewind

Utilities for processing forecasts, does a lot of things semi-competently

rmapi icon rmapi

Mapping Averaged Pairwise Information in R

rmnist icon rmnist

:one::writing_hand: R interface to the 'MNIST' collection of handwritten digits

rrq icon rrq

:runner::runner::runner: Lightweight Redis queues

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