Comments (5)
chhylp123
commented on June 25, 2024
Which version are you using? Is it possible that you can share the bin files and UL reads with me? I could do a very quick check. Thanks.
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fergsc
commented on June 25, 2024
I have emailed you a link to the ONT UL and bin files.
I am using HiFiAsm version 0.19.6-r595
Thanks for looking in to this.
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chhylp123
commented on June 25, 2024
Thanks. I just had a try with your bin files and UL reads using the github HEAD (0.19.6-r597). Hifiasm could produce final contigs without issues. Could you please have a try with current HEAD? Thanks so much!
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fergsc
commented on June 25, 2024
Success.
I also ran it with additional UL and with Hi-C data and it ran till completion.
Thanks for the help.
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chhylp123
commented on June 25, 2024
Great. Thanks for the updates.
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Related Issues (20)
- Output interpretation with HiFi+ONT+HiC with inbred samples + `-l0` HOT 1
- low BUSCO scores HOT 1
- Mitigate Overlapping Sequence Assignments in Haplotypes HOT 3
- Help!!! Segmentation fault (core dumped) HOT 1
- Question about the depth of ONT ultra-long reads HOT 1
- Homotetraploid, super-large genome, with different parameters, the size of p_utg varies greatly？ HOT 2
- setting K parameter in yak HOT 2
- how to make the correct genome size estimation for allotetraploid species? HOT 2
- Possible missing one haplotype in human assemblies HOT 2
- No haploid.gfa files output in trio-binning mode HOT 3
- Hifi + Hi-c + ONT assembly fails
- In Trio-binning, always more on hap1 despite (almost) same sequences for paternal and maternal
- discontinuous assembly with shorter pacbio hifi reads but high coverage HOT 2
- Is x20 of Hifi data enough to construct draft assembly of 6.5Gb genome? HOT 1
- line 8: 110334 Aborted(core dumped) HOT 1
- Ultra Long intergration failed: no output for UL kmer counting HOT 3
- missing 8Mb sequences in the assembly HOT 5
- Empty haplotype 2 gfa files by ONT integration HOT 1
- Basic Question About HiFi Input HOT 3
- Spend too long times to run hifiasm HOT 4
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