Related Issues (20)
- Interchromosomal misjoin HOT 2
- Read error correction does not reduce the number of kmers present once, twice or three times HOT 1
- Recreate p_ctg from p_utg HOT 3
- In the diploid assembly, hfiiasm identified a value that did not exist in the k-mer plot as the "homozygous read coverage threshold".
- fungi diploid assemble phasing errors
- What is the strategy for Ultra-long ONT integration? HOT 6
- No further progress after generating *bin files HOT 1
- Issues with Hexaploid Assembly HOT 4
- Numerous spurious contig overlaps in assemblies HOT 10
- output GFA with J lines in scaffolding mode
- Output that maps repeat shrapnels to unitigs and to scaffolded chromsomes
- High Duplication in my Assembly...l3 (purge-dup) doesn't help much HOT 1
- How to classify hifi reads into haplotype genomes? minimap2 did not work well HOT 3
- False inserts over duplicated regions (TRBV12-3/4) HOT 2
- Whether unitig will be filtered based on the hic signal of unitig HOT 2
- Hifiasm Assembly Purging HOT 2
- "c" suffix on contigs HOT 1
- The genome size of p_ctg.fa is smaller than survey HOT 2
- output of partial phasing - some unitig can be missing in one haploid? HOT 3
- assembly genome is bigger than survey, error log HOT 1
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