discontinuous assembly with shorter pacbio hifi reads but high coverage about hifiasm HOT 2 OPEN

Sorry for the late reply. Could you please show the log file?

from hifiasm.

No worries! I've tried down-sampling the reads so that there's a maximum coverage cutoff of 50x in the whole region of interests. The results are almost identical as before.

Here's an example log file:

Loading R/4.3.0
Loading requirement: intel/2022.1.1 java/jdk-11.0.14
[M::ha_analyze_count] lowest: count[8] = 5120
[M::ha_analyze_count] highest: count[41] = 8241
[M::ha_hist_line] 2: ****************************************************************************************************> 95517
[M::ha_hist_line] 3: ****************************************************************************************************> 16614
[M::ha_hist_line] 4: ****************************************************************************************************> 11034
[M::ha_hist_line] 5: ****************************************************************************************************> 8524
[M::ha_hist_line] 6: ********************************************************************************************* 7694
[M::ha_hist_line] 7: ******************************************************************************************** 7579
[M::ha_hist_line] 8: ************************************************************** 5120
[M::ha_hist_line] 9: ************************************************************************** 6097
[M::ha_hist_line] 10: **************************************************************** 5247
[M::ha_hist_line] 11: ***************************************************** 4402
[M::ha_hist_line] 12: *********************************************************** 4839
[M::ha_hist_line] 13: ****************************************************** 4452
[M::ha_hist_line] 14: ************************************************* 4053
[M::ha_hist_line] 15: ****************************************************** 4446
[M::ha_hist_line] 16: ************************************************************ 4982
[M::ha_hist_line] 17: ********************************************************* 4705
[M::ha_hist_line] 18: ********************************************************** 4785
[M::ha_hist_line] 19: ********************************************** 3781
[M::ha_hist_line] 20: ************************************************** 4116
[M::ha_hist_line] 21: *********************************************** 3836
[M::ha_hist_line] 22: ********************************************* 3670
[M::ha_hist_line] 23: ********************************************** 3761
[M::ha_hist_line] 24: ************************************************ 3960
[M::ha_hist_line] 25: **************************************** 3271
[M::ha_hist_line] 26: ******************************************** 3647
[M::ha_hist_line] 27: ******************************* 2585
[M::ha_hist_line] 28: ****************************** 2510
[M::ha_hist_line] 29: *************************************** 3237
[M::ha_hist_line] 30: ************************************ 2983
[M::ha_hist_line] 31: ****************************************** 3440
[M::ha_hist_line] 32: ********************************************* 3713
[M::ha_hist_line] 33: *************************************************** 4182
[M::ha_hist_line] 34: ******************************************************************** 5565
[M::ha_hist_line] 35: *************************************************************** 5160
[M::ha_hist_line] 36: *********************************************************** 4837
[M::ha_hist_line] 37: ***************************************************************** 5320
[M::ha_hist_line] 38: ********************************************************************** 5739
[M::ha_hist_line] 39: **************************************************************************** 6242
[M::ha_hist_line] 40: ***************************************************************************************** 7312
[M::ha_hist_line] 41: **************************************************************************************************** 8241
[M::ha_hist_line] 42: ****************************************************************************************** 7383
[M::ha_hist_line] 43: **************************************************************************** 6245
[M::ha_hist_line] 44: ************************************************************************** 6061
[M::ha_hist_line] 45: *************************************************************************** 6213
[M::ha_hist_line] 46: *************************************************************************** 6183
[M::ha_hist_line] 47: ******************************************************************** 5587
[M::ha_hist_line] 48: *************************************************************** 5151
[M::ha_hist_line] 49: *************************************************************** 5223
[M::ha_hist_line] 50: ****************************************************************** 5419
[M::ha_hist_line] 51: ******************************************************* 4547
[M::ha_hist_line] 52: **************************************************************** 5234
[M::ha_hist_line] 53: *************************************************************** 5230
[M::ha_hist_line] 54: ******************************************************************* 5540
[M::ha_hist_line] 55: *********************************************************** 4893
[M::ha_hist_line] 56: *********************************************************** 4882
[M::ha_hist_line] 57: ************************************************************* 5033
[M::ha_hist_line] 58: ************************************************************ 4915
[M::ha_hist_line] 59: ********************************************************************* 5708
[M::ha_hist_line] 60: ************************************************************** 5145
[M::ha_hist_line] 61: ********************************************************** 4757
[M::ha_hist_line] 62: ****************************************************************** 5448
[M::ha_hist_line] 63: ************************************************************** 5136
[M::ha_hist_line] 64: *********************************************************** 4881
[M::ha_hist_line] 65: ************************************************************** 5135
[M::ha_hist_line] 66: ******************************************************************* 5511
[M::ha_hist_line] 67: ****************************************************************************** 6401
[M::ha_hist_line] 68: ************************************************************************ 5922
[M::ha_hist_line] 69: ****************************************************************************** 6404
[M::ha_hist_line] 70: *********************************************************************** 5866
[M::ha_hist_line] 71: ***************************************************************************** 6379
[M::ha_hist_line] 72: **************************************************************************** 6285
[M::ha_hist_line] 73: *********************************************************************** 5862
[M::ha_hist_line] 74: ******************************************************************* 5500
[M::ha_hist_line] 75: ************************************************************** 5131
[M::ha_hist_line] 76: ************************************************************** 5141
[M::ha_hist_line] 77: ***************************************************************** 5346
[M::ha_hist_line] 78: ************************************************************************* 6028
[M::ha_hist_line] 79: ************************************************************************ 5912
[M::ha_hist_line] 80: *********************************************************************** 5889
[M::ha_hist_line] 81: ********************************************************************************* 6713
[M::ha_hist_line] 82: ************************************************************************* 6025
[M::ha_hist_line] 83: *************************************************************************** 6140
[M::ha_hist_line] 84: **************************************************************** 5293
[M::ha_hist_line] 85: ****************************************************************************** 6440
[M::ha_hist_line] 86: **************************************************************************** 6242
[M::ha_hist_line] 87: *********************************************************************** 5874
[M::ha_hist_line] 88: ************************************************************ 4961
[M::ha_hist_line] 89: *********************************************************** 4903
[M::ha_hist_line] 90: ********************************************************* 4680
[M::ha_hist_line] 91: ******************************************************** 4583
[M::ha_hist_line] 92: ********************************************************** 4784
[M::ha_hist_line] 93: ****************************************************************** 5448
[M::ha_hist_line] 94: ************************************************************************* 6037
[M::ha_hist_line] 95: ******************************************************************************* 6473
[M::ha_hist_line] 96: **************************************************************** 5252
[M::ha_hist_line] 97: ***************************************************************** 5359
[M::ha_hist_line] 98: **************************************************************** 5251
[M::ha_hist_line] 99: **************************************************************************** 6271
[M::ha_hist_line] 100: *************************************************************************** 6220
[M::ha_hist_line] 101: ************************************************************************* 6037
[M::ha_hist_line] 102: ************************************************************** 5144
[M::ha_hist_line] 103: ******************************************************************* 5485
[M::ha_hist_line] 104: ******************************************************************** 5587
[M::ha_hist_line] 105: **************************************************************** 5257
[M::ha_hist_line] 106: ****************************************************************** 5459
[M::ha_hist_line] 107: ******************************************************************** 5577
[M::ha_hist_line] 108: ********************************************************************** 5784
[M::ha_hist_line] 109: *********************************************************************** 5815
[M::ha_hist_line] 110: ***************************************************************************** 6357
[M::ha_hist_line] 111: *************************************************************************** 6156
[M::ha_hist_line] 112: *********************************************************************************** 6862
[M::ha_hist_line] 113: ********************************************************************************* 6664
[M::ha_hist_line] 114: ***************************************************************************** 6331
[M::ha_hist_line] 115: ************************************************************************* 6012
[M::ha_hist_line] 116: ********************************************************************** 5753
[M::ha_hist_line] 117: *********************************************************************** 5870
[M::ha_hist_line] 118: ******************************************************************* 5490
[M::ha_hist_line] 119: ************************************************************** 5112
[M::ha_hist_line] 120: *********************************************************** 4887
[M::ha_hist_line] 121: ********************************************************* 4699
[M::ha_hist_line] 122: **************************************************** 4318
[M::ha_hist_line] 123: ****************************************************** 4449
[M::ha_hist_line] 124: ************************************************** 4151
[M::ha_hist_line] 125: **************************************************** 4322
[M::ha_hist_line] 126: *************************************************** 4188
[M::ha_hist_line] 127: ************************************************ 3918
[M::ha_hist_line] 128: *************************************************** 4208
[M::ha_hist_line] 129: ************************************************** 4116
[M::ha_hist_line] 130: *********************************************** 3872
[M::ha_hist_line] 131: ******************************************* 3539
[M::ha_hist_line] 132: ***************************************** 3341
[M::ha_hist_line] 133: ************************************* 3077
[M::ha_hist_line] 134: ******************************** 2666
[M::ha_hist_line] 135: ************************************* 3078
[M::ha_hist_line] 136: *************************************** 3207
[M::ha_hist_line] 137: ********************************** 2792
[M::ha_hist_line] 138: ******************************* 2537
[M::ha_hist_line] 139: ************************************* 3047
[M::ha_hist_line] 140: **************************** 2317
[M::ha_hist_line] 141: ******************************* 2551
[M::ha_hist_line] 142: ************************* 2096
[M::ha_hist_line] 143: *********************** 1931
[M::ha_hist_line] 144: ************************ 1946
[M::ha_hist_line] 145: ************************ 1969
[M::ha_hist_line] 146: ********************** 1805
[M::ha_hist_line] 147: ****************** 1453
[M::ha_hist_line] 148: ***************** 1420
[M::ha_hist_line] 149: ***************** 1407
[M::ha_hist_line] 150: **************** 1304
[M::ha_hist_line] 151: ***************** 1392
[M::ha_hist_line] 152: **************** 1303
[M::ha_hist_line] 153: ***************** 1394
[M::ha_hist_line] 154: **************** 1297
[M::ha_hist_line] 155: *************** 1248
[M::ha_hist_line] 156: ************ 948
[M::ha_hist_line] 157: ************* 1109
[M::ha_hist_line] 158: ********** 865
[M::ha_hist_line] 159: ************ 1004
[M::ha_hist_line] 160: *********** 927
[M::ha_hist_line] 161: ************** 1154
[M::ha_hist_line] 162: ************* 1054
[M::ha_hist_line] 163: ************* 1109
[M::ha_hist_line] 164: ************* 1076
[M::ha_hist_line] 165: ************** 1137
[M::ha_hist_line] 166: ************** 1190
[M::ha_hist_line] 167: ************** 1167
[M::ha_hist_line] 168: ************* 1057
[M::ha_hist_line] 169: ************* 1095
[M::ha_hist_line] 170: *********** 875
[M::ha_hist_line] 171: ************ 969
[M::ha_hist_line] 172: ************ 1010
[M::ha_hist_line] 173: ************ 951
[M::ha_hist_line] 174: *************** 1248
[M::ha_hist_line] 175: **************** 1300
[M::ha_hist_line] 176: ************** 1128
[M::ha_hist_line] 177: ************ 969
[M::ha_hist_line] 178: ************** 1163
[M::ha_hist_line] 179: ************** 1155
[M::ha_hist_line] 180: ************ 1015
[M::ha_hist_line] 181: ************* 1097
[M::ha_hist_line] 182: ************* 1052
[M::ha_hist_line] 183: ************* 1095
[M::ha_hist_line] 184: ************ 1015
[M::ha_hist_line] 185: ************** 1132
[M::ha_hist_line] 186: ************ 1003
[M::ha_hist_line] 187: ********* 760
[M::ha_hist_line] 188: ******** 697
[M::ha_hist_line] 189: ******* 598
[M::ha_hist_line] 190: ********* 715
[M::ha_hist_line] 191: ******** 669
[M::ha_hist_line] 192: ******** 624
[M::ha_hist_line] 193: ********* 711
[M::ha_hist_line] 194: ***** 447
[M::ha_hist_line] 195: ***** 402
[M::ha_hist_line] 196: ******* 559
[M::ha_hist_line] 197: ****** 461
[M::ha_hist_line] 198: ****** 463
[M::ha_hist_line] 199: **** 303
[M::ha_hist_line] 200: **** 320
[M::ha_hist_line] 201: ***** 377
[M::ha_hist_line] 202: ***** 409
[M::ha_hist_line] 203: ****** 465
[M::ha_hist_line] 204: **** 325
[M::ha_hist_line] 205: **** 297
[M::ha_hist_line] 206: *** 249
[M::ha_hist_line] 207: **** 299
[M::ha_hist_line] 208: *** 255
[M::ha_hist_line] 209: *** 232
[M::ha_hist_line] 210: *** 247
[M::ha_hist_line] 211: ** 197
[M::ha_hist_line] 212: *** 288
[M::ha_hist_line] 213: **** 335
[M::ha_hist_line] 214: **** 308
[M::ha_hist_line] 215: *** 232
[M::ha_hist_line] 216: *** 282
[M::ha_hist_line] 217: ***** 383
[M::ha_hist_line] 218: *** 267
[M::ha_hist_line] 219: *** 263
[M::ha_hist_line] 220: **** 305
[M::ha_hist_line] 221: *** 277
[M::ha_hist_line] 222: *** 255
[M::ha_hist_line] 223: *** 259
[M::ha_hist_line] 224: *** 232
[M::ha_hist_line] 225: ** 204
[M::ha_hist_line] 226: ** 180
[M::ha_hist_line] 227: *** 269
[M::ha_hist_line] 228: ** 180
[M::ha_hist_line] 229: *** 216
[M::ha_hist_line] 230: ** 204
[M::ha_hist_line] 231: *** 211
[M::ha_hist_line] 232: ** 195
[M::ha_hist_line] 233: *** 265
[M::ha_hist_line] 234: **** 324
[M::ha_hist_line] 235: **** 296
[M::ha_hist_line] 236: **** 318
[M::ha_hist_line] 237: **** 365
[M::ha_hist_line] 238: *** 243
[M::ha_hist_line] 239: *** 227
[M::ha_hist_line] 240: *** 220
[M::ha_hist_line] 241: *** 228
[M::ha_hist_line] 242: ** 148
[M::ha_hist_line] 243: ** 182
[M::ha_hist_line] 244: ** 158
[M::ha_hist_line] 245: ** 144
[M::ha_hist_line] 246: ** 128
[M::ha_hist_line] 247: * 73
[M::ha_hist_line] 248: * 81
[M::ha_hist_line] 249: * 50
[M::ha_hist_line] 250: * 64
[M::ha_hist_line] 251: * 50
[M::ha_hist_line] 252: * 56
[M::ha_hist_line] 253: * 67
[M::ha_hist_line] rest: *************************************************************************************************> 10248
[M::ha_analyze_count] left: count[9] = 6097
[M::ha_analyze_count] right: none
[M::ha_ft_gen] peak_hom: 41; peak_het: 9
[M::ha_ct_shrink::15.1681.67] ==> counted 2 distinct minimizer k-mers
[M::ha_ft_gen::15.188[email protected]] ==> filtered out 2 k-mers occurring 4094 or more times
[M::ha_opt_update_cov] updated max_n_chain to 41000
[M::yak_count] collected 2671532 minimizers
[M::ha_pt_gen::16.4141.87] ==> counted 91858 distinct minimizer k-mers
[M::ha_pt_gen] count[4095] = 0 (for sanity check)
[M::ha_analyze_count] lowest: count[8] = 211
[M::ha_analyze_count] highest: count[41] = 319
[M::ha_hist_line] 1: ****************************************************************************************************> 54741
[M::ha_hist_line] 2: ****************************************************************************************************> 5040
[M::ha_hist_line] 3: ****************************************************************************************************> 1024
[M::ha_hist_line] 4: ****************************************************************************************************> 544
[M::ha_hist_line] 5: ****************************************************************************************************> 382
[M::ha_hist_line] 6: ************************************************************************************************* 308
[M::ha_hist_line] 7: ********************************************************************************************* 298
[M::ha_hist_line] 8: ****************************************************************** 211
[M::ha_hist_line] 9: ***************************************************************************** 246
[M::ha_hist_line] 10: ****************************************************************** 210
[M::ha_hist_line] 11: *********************************************************** 187
[M::ha_hist_line] 12: ********************************************************** 185
[M::ha_hist_line] 13: ******************************************************* 174
[M::ha_hist_line] 14: ********************************************** 146
[M::ha_hist_line] 15: ****************************************************** 173
[M::ha_hist_line] 16: *************************************************************** 202
[M::ha_hist_line] 17: ************************************************************** 198
[M::ha_hist_line] 18: ********************************************************* 182
[M::ha_hist_line] 19: *************************************************** 162
[M::ha_hist_line] 20: ***************************************************** 169
[M::ha_hist_line] 21: ********************************************** 148
[M::ha_hist_line] 22: *************************************************** 163
[M::ha_hist_line] 23: *********************************************** 150
[M::ha_hist_line] 24: *********************************************** 150
[M::ha_hist_line] 25: ******************************************* 137
[M::ha_hist_line] 26: ******************************************** 140
[M::ha_hist_line] 27: ******************************* 100
[M::ha_hist_line] 28: ************************************* 118
[M::ha_hist_line] 29: ************************************* 118
[M::ha_hist_line] 30: ******************************************** 140
[M::ha_hist_line] 31: ******************************************** 140
[M::ha_hist_line] 32: ************************************************* 157
[M::ha_hist_line] 33: ******************************************************* 175
[M::ha_hist_line] 34: ************************************************************************* 232
[M::ha_hist_line] 35: ************************************************************* 196
[M::ha_hist_line] 36: ********************************************************** 186
[M::ha_hist_line] 37: *************************************************************** 201
[M::ha_hist_line] 38: ************************************************************************ 230
[M::ha_hist_line] 39: *********************************************************************************** 264
[M::ha_hist_line] 40: ************************************************************************************************* 310
[M::ha_hist_line] 41: **************************************************************************************************** 319
[M::ha_hist_line] 42: ****************************************************************************************** 286
[M::ha_hist_line] 43: ***************************************************************** 207
[M::ha_hist_line] 44: ******************************************************************************** 256
[M::ha_hist_line] 45: ************************************************************************* 233
[M::ha_hist_line] 46: ********************************************************************** 223
[M::ha_hist_line] 47: ****************************************************************************** 248
[M::ha_hist_line] 48: ***************************************************************** 207
[M::ha_hist_line] 49: ******************************************************************** 216
[M::ha_hist_line] 50: ***************************************************************** 206
[M::ha_hist_line] 51: ******************************************************** 179
[M::ha_hist_line] 52: *********************************************************************** 227
[M::ha_hist_line] 53: ********************************************************** 186
[M::ha_hist_line] 54: ************************************************************* 194
[M::ha_hist_line] 55: ************************************************************************* 234
[M::ha_hist_line] 56: ************************************************************ 190
[M::ha_hist_line] 57: *************************************************************** 201
[M::ha_hist_line] 58: ******************************************************************* 214
[M::ha_hist_line] 59: ********************************************************************* 220
[M::ha_hist_line] 60: ************************************************************* 195
[M::ha_hist_line] 61: **************************************************************** 203
[M::ha_hist_line] 62: ************************************************************** 197
[M::ha_hist_line] 63: ************************************************************** 199
[M::ha_hist_line] 64: ***************************************************************** 206
[M::ha_hist_line] 65: ************************************************************* 195
[M::ha_hist_line] 66: ************************************************************************ 230
[M::ha_hist_line] 67: ************************************************************************************ 267
[M::ha_hist_line] 68: **************************************************************************** 242
[M::ha_hist_line] 69: **************************************************************************** 244
[M::ha_hist_line] 70: *************************************************************************** 240
[M::ha_hist_line] 71: ************************************************************************** 237
[M::ha_hist_line] 72: ********************************************************************** 223
[M::ha_hist_line] 73: *************************************************************************** 240
[M::ha_hist_line] 74: ******************************************************************** 216
[M::ha_hist_line] 75: ************************************************************ 190
[M::ha_hist_line] 76: ****************************************************************** 210
[M::ha_hist_line] 77: ************************************************************** 199
[M::ha_hist_line] 78: ************************************************************************* 232
[M::ha_hist_line] 79: ************************************************************************** 235
[M::ha_hist_line] 80: ************************************************************************* 232
[M::ha_hist_line] 81: *************************************************************************************** 278
[M::ha_hist_line] 82: *********************************************************************** 228
[M::ha_hist_line] 83: ************************************************************************* 233
[M::ha_hist_line] 84: *************************************************************************** 238
[M::ha_hist_line] 85: ************************************************************************ 230
[M::ha_hist_line] 86: ********************************************************************** 222
[M::ha_hist_line] 87: ****************************************************************** 210
[M::ha_hist_line] 88: *********************************************************** 187
[M::ha_hist_line] 89: ************************************************************ 192
[M::ha_hist_line] 90: ********************************************************* 182
[M::ha_hist_line] 91: *************************************************** 163
[M::ha_hist_line] 92: ********************************************************************* 219
[M::ha_hist_line] 93: *********************************************************************** 225
[M::ha_hist_line] 94: *********************************************************************** 228
[M::ha_hist_line] 95: ***************************************************************************** 247
[M::ha_hist_line] 96: ******************************************************************* 215
[M::ha_hist_line] 97: ***************************************************************** 208
[M::ha_hist_line] 98: **************************************************************** 204
[M::ha_hist_line] 99: ****************************************************************************** 249
[M::ha_hist_line] 100: *********************************************************************** 226
[M::ha_hist_line] 101: ******************************************************************* 213
[M::ha_hist_line] 102: *********************************************************************** 225
[M::ha_hist_line] 103: *********************************************************** 189
[M::ha_hist_line] 104: ******************************************************************* 215
[M::ha_hist_line] 105: *********************************************************************** 225
[M::ha_hist_line] 106: ************************************************************************ 229
[M::ha_hist_line] 107: ******************************************************************* 215
[M::ha_hist_line] 108: ********************************************************************************* 258
[M::ha_hist_line] 109: *********************************************************************** 226
[M::ha_hist_line] 110: **************************************************************************** 243
[M::ha_hist_line] 111: ********************************************************************** 224
[M::ha_hist_line] 112: ************************************************************************************ 268
[M::ha_hist_line] 113: *********************************************************************************** 266
[M::ha_hist_line] 114: ********************************************************************** 224
[M::ha_hist_line] 115: ****************************************************************** 209
[M::ha_hist_line] 116: ************************************************************************ 229
[M::ha_hist_line] 117: *********************************************************************** 227
[M::ha_hist_line] 118: ************************************************************* 196
[M::ha_hist_line] 119: ************************************************************* 194
[M::ha_hist_line] 120: ********************************************************* 181
[M::ha_hist_line] 121: ****************************************************** 171
[M::ha_hist_line] 122: ********************************************************** 184
[M::ha_hist_line] 123: ****************************************************** 171
[M::ha_hist_line] 124: ******************************************************* 176
[M::ha_hist_line] 125: ************************************************** 159
[M::ha_hist_line] 126: ******************************************************* 175
[M::ha_hist_line] 127: **************************************** 128
[M::ha_hist_line] 128: ************************************************* 156
[M::ha_hist_line] 129: ***************************************** 132
[M::ha_hist_line] 130: ************************************************ 153
[M::ha_hist_line] 131: *********************************** 112
[M::ha_hist_line] 132: *************************************** 125
[M::ha_hist_line] 133: ************************************ 116
[M::ha_hist_line] 134: ********************************** 108
[M::ha_hist_line] 135: ****************************** 96
[M::ha_hist_line] 136: *************************************** 126
[M::ha_hist_line] 137: ********************************** 109
[M::ha_hist_line] 138: ************************************* 118
[M::ha_hist_line] 139: ********************************** 109
[M::ha_hist_line] 140: ************************** 83
[M::ha_hist_line] 141: *************************** 86
[M::ha_hist_line] 142: ********************** 70
[M::ha_hist_line] 143: *********************** 72
[M::ha_hist_line] 144: *********************** 72
[M::ha_hist_line] 145: ********************** 71
[M::ha_hist_line] 146: ***************** 55
[M::ha_hist_line] 147: **************** 50
[M::ha_hist_line] 148: ************** 45
[M::ha_hist_line] 149: ************** 46
[M::ha_hist_line] 150: ******************* 61
[M::ha_hist_line] 151: ************** 46
[M::ha_hist_line] 152: **************** 51
[M::ha_hist_line] 153: **************** 51
[M::ha_hist_line] 154: ************* 41
[M::ha_hist_line] 155: ************* 43
[M::ha_hist_line] 156: *********** 35
[M::ha_hist_line] 157: ************ 38
[M::ha_hist_line] 158: ********** 31
[M::ha_hist_line] 159: ********** 32
[M::ha_hist_line] 160: ************** 45
[M::ha_hist_line] 161: ************** 45
[M::ha_hist_line] 162: ************* 43
[M::ha_hist_line] 163: ************ 37
[M::ha_hist_line] 164: ************* 40
[M::ha_hist_line] 165: *********** 36
[M::ha_hist_line] 166: **************** 50
[M::ha_hist_line] 167: ************** 45
[M::ha_hist_line] 168: *********** 36
[M::ha_hist_line] 169: ************** 46
[M::ha_hist_line] 170: **************** 52
[M::ha_hist_line] 171: *********** 36
[M::ha_hist_line] 172: ********** 33
[M::ha_hist_line] 173: *************** 47
[M::ha_hist_line] 174: **************** 50
[M::ha_hist_line] 175: **************** 51
[M::ha_hist_line] 176: ************** 45
[M::ha_hist_line] 177: ************ 38
[M::ha_hist_line] 178: ********* 28
[M::ha_hist_line] 179: ************** 45
[M::ha_hist_line] 180: ************* 40
[M::ha_hist_line] 181: ************** 45
[M::ha_hist_line] 182: ************ 39
[M::ha_hist_line] 183: ********** 33
[M::ha_hist_line] 184: ************* 41
[M::ha_hist_line] 185: ************* 40
[M::ha_hist_line] 186: ************ 37
[M::ha_hist_line] 187: ********** 31
[M::ha_hist_line] 188: ****** 19
[M::ha_hist_line] 189: ********* 30
[M::ha_hist_line] 190: ******* 23
[M::ha_hist_line] 191: ******** 25
[M::ha_hist_line] 192: ******* 23
[M::ha_hist_line] 193: ******* 23
[M::ha_hist_line] 194: ***** 16
[M::ha_hist_line] 195: **** 14
[M::ha_hist_line] 196: ******* 21
[M::ha_hist_line] 197: ****** 20
[M::ha_hist_line] 198: *** 10
[M::ha_hist_line] 199: ***** 17
[M::ha_hist_line] 200: **** 12
[M::ha_hist_line] 201: ****** 20
[M::ha_hist_line] 202: **** 12
[M::ha_hist_line] 203: **** 13
[M::ha_hist_line] 204: *** 10
[M::ha_hist_line] 205: *** 10
[M::ha_hist_line] 206: ** 5
[M::ha_hist_line] 207: ***** 16
[M::ha_hist_line] 208: *** 9
[M::ha_hist_line] 209: * 3
[M::ha_hist_line] 210: **** 12
[M::ha_hist_line] 211: **** 12
[M::ha_hist_line] 212: *** 11
[M::ha_hist_line] 213: *** 9
[M::ha_hist_line] 214: *** 9
[M::ha_hist_line] 215: *** 9
[M::ha_hist_line] 216: **** 12
[M::ha_hist_line] 217: *** 9
[M::ha_hist_line] 218: **** 14
[M::ha_hist_line] 219: * 3
[M::ha_hist_line] 220: *** 9
[M::ha_hist_line] 221: *** 9
[M::ha_hist_line] 222: ** 6
[M::ha_hist_line] 223: ** 6
[M::ha_hist_line] 224: ** 7
[M::ha_hist_line] 225: *** 9
[M::ha_hist_line] 226: *** 10
[M::ha_hist_line] 227: *** 11
[M::ha_hist_line] 228: * 2
[M::ha_hist_line] 229: *** 9
[M::ha_hist_line] 230: *** 10
[M::ha_hist_line] 231: ** 7
[M::ha_hist_line] 232: ** 6
[M::ha_hist_line] 233: **** 12
[M::ha_hist_line] 234: *** 9
[M::ha_hist_line] 235: **** 13
[M::ha_hist_line] 236: **** 13
[M::ha_hist_line] 237: *** 9
[M::ha_hist_line] 238: ** 6
[M::ha_hist_line] 239: ** 5
[M::ha_hist_line] 240: *** 8
[M::ha_hist_line] 241: ** 6
[M::ha_hist_line] 242: * 3
[M::ha_hist_line] 243: ** 7
[M::ha_hist_line] 244: ** 6
[M::ha_hist_line] 245: ** 5
[M::ha_hist_line] 246: * 3
[M::ha_hist_line] 247: * 2
[M::ha_hist_line] 248: * 2
[M::ha_hist_line] rest: ************************************************************************************************> 385
[M::ha_analyze_count] left: count[9] = 246
[M::ha_analyze_count] right: count[81] = 278
[M::ha_pt_gen] peak_hom: 41; peak_het: 9
[M::ha_ct_shrink::16.4341.87] ==> counted 37117 distinct minimizer k-mers
[M::ha_pt_gen::] counting in normal mode
[M::yak_count] collected 2671532 minimizers
[M::ha_pt_gen::16.9602.09] ==> indexed 2616791 positions, counted 37117 distinct minimizer k-mers
[M::ha_assemble::41.423[email protected]] ==> corrected reads for round 1
[M::ha_assemble] # bases: 100589746; # corrected bases: 127238; # recorrected bases: 725
[M::ha_assemble] size of buffer: 0.700GB
[M::yak_count] collected 2671240 minimizers
[M::ha_pt_gen::41.89712.84] ==> counted 36621 distinct minimizer k-mers
[M::ha_pt_gen] count[4095] = 0 (for sanity check)
[M::ha_analyze_count] lowest: count[6] = 254
[M::ha_analyze_count] highest: count[42] = 343
[M::ha_hist_line] 1: ****************************************************************************************************> 4261
[M::ha_hist_line] 2: ****************************************************************************************************> 1115
[M::ha_hist_line] 3: ****************************************************************************************************> 555
[M::ha_hist_line] 4: ****************************************************************************************************> 368
[M::ha_hist_line] 5: ******************************************************************************************** 316
[M::ha_hist_line] 6: ************************************************************************** 254
[M::ha_hist_line] 7: ************************************************************************************ 289
[M::ha_hist_line] 8: ******************************************************* 187
[M::ha_hist_line] 9: ***************************************************************** 222
[M::ha_hist_line] 10: ************************************************************* 208
[M::ha_hist_line] 11: ************************************************** 172
[M::ha_hist_line] 12: *************************************************** 174
[M::ha_hist_line] 13: ***************************************************** 181
[M::ha_hist_line] 14: ********************************************** 158
[M::ha_hist_line] 15: ****************************************** 143
[M::ha_hist_line] 16: ******************************************************* 189
[M::ha_hist_line] 17: ************************************************** 170
[M::ha_hist_line] 18: *************************************************************** 216
[M::ha_hist_line] 19: ************************************* 128
[M::ha_hist_line] 20: *************************************************** 175
[M::ha_hist_line] 21: ********************************************** 158
[M::ha_hist_line] 22: ******************************************* 149
[M::ha_hist_line] 23: ************************************* 128
[M::ha_hist_line] 24: ************************************************** 170
[M::ha_hist_line] 25: **************************************** 138
[M::ha_hist_line] 26: ****************************************** 143
[M::ha_hist_line] 27: ****************************** 102
[M::ha_hist_line] 28: ******************************** 111
[M::ha_hist_line] 29: ********************************** 116
[M::ha_hist_line] 30: *********************************** 121
[M::ha_hist_line] 31: *********************************** 121
[M::ha_hist_line] 32: ************************************ 123
[M::ha_hist_line] 33: ************************************************ 166
[M::ha_hist_line] 34: ************************************************************ 207
[M::ha_hist_line] 35: ************************************************************* 210
[M::ha_hist_line] 36: ********************************************** 159
[M::ha_hist_line] 37: ****************************************************** 185
[M::ha_hist_line] 38: *********************************************************************** 244
[M::ha_hist_line] 39: ************************************************* 167
[M::ha_hist_line] 40: ******************************************************************************** 274
[M::ha_hist_line] 41: *************************************************************************************************** 338
[M::ha_hist_line] 42: **************************************************************************************************** 343
[M::ha_hist_line] 43: ************************************************************************** 253
[M::ha_hist_line] 44: ****************************************************************** 225
[M::ha_hist_line] 45: ********************************************************************** 239
[M::ha_hist_line] 46: ****************************************************************** 228
[M::ha_hist_line] 47: ************************************************************ 207
[M::ha_hist_line] 48: ********************************************************************** 239
[M::ha_hist_line] 49: ************************************************************** 211
[M::ha_hist_line] 50: ************************************************************ 207
[M::ha_hist_line] 51: *********************************************************** 201
[M::ha_hist_line] 52: ************************************************************* 209
[M::ha_hist_line] 53: ************************************************************ 207
[M::ha_hist_line] 54: ****************************************************** 184
[M::ha_hist_line] 55: ***************************************************** 183
[M::ha_hist_line] 56: ************************************************ 163
[M::ha_hist_line] 57: *************************************************************** 217
[M::ha_hist_line] 58: **************************************************** 177
[M::ha_hist_line] 59: ********************************************************************** 240
[M::ha_hist_line] 60: ********************************************************* 196
[M::ha_hist_line] 61: ***************************************************** 183
[M::ha_hist_line] 62: ******************************************************** 192
[M::ha_hist_line] 63: ****************************************************** 185
[M::ha_hist_line] 64: ***************************************************** 183
[M::ha_hist_line] 65: ********************************************************* 197
[M::ha_hist_line] 66: ************************************************************ 206
[M::ha_hist_line] 67: ******************************************************************** 233
[M::ha_hist_line] 68: ********************************************************************** 240
[M::ha_hist_line] 69: ************************************************************************** 253
[M::ha_hist_line] 70: *********************************************************************** 245
[M::ha_hist_line] 71: ************************************************************************* 250
[M::ha_hist_line] 72: *********************************************************************** 244
[M::ha_hist_line] 73: ***************************************************************** 223
[M::ha_hist_line] 74: *************************************************************** 215
[M::ha_hist_line] 75: ************************************************************ 205
[M::ha_hist_line] 76: **************************************************************** 218
[M::ha_hist_line] 77: *************************************************************** 215
[M::ha_hist_line] 78: ***************************************************** 183
[M::ha_hist_line] 79: *********************************************************** 201
[M::ha_hist_line] 80: ********************************************************** 200
[M::ha_hist_line] 81: *************************************************************************** 256
[M::ha_hist_line] 82: ******************************************************************************** 273
[M::ha_hist_line] 83: *************************************************************** 217
[M::ha_hist_line] 84: ****************************************************************** 226
[M::ha_hist_line] 85: ******************************************************************** 232
[M::ha_hist_line] 86: *************************************************************** 215
[M::ha_hist_line] 87: ************************************************************************ 247
[M::ha_hist_line] 88: ****************************************************************** 226
[M::ha_hist_line] 89: ************************************************** 170
[M::ha_hist_line] 90: ******************************************************* 188
[M::ha_hist_line] 91: ********************************************* 153
[M::ha_hist_line] 92: ****************************************************** 184
[M::ha_hist_line] 93: ************************************************************ 205
[M::ha_hist_line] 94: *************************************************************** 216
[M::ha_hist_line] 95: **************************************************************************** 259
[M::ha_hist_line] 96: ************************************************************** 213
[M::ha_hist_line] 97: ********************************************** 157
[M::ha_hist_line] 98: ***************************************************************** 224
[M::ha_hist_line] 99: ********************************************************************* 235
[M::ha_hist_line] 100: ********************************************************************** 241
[M::ha_hist_line] 101: **************************************************************** 218
[M::ha_hist_line] 102: *************************************************************** 216
[M::ha_hist_line] 103: ************************************************************* 208
[M::ha_hist_line] 104: ****************************************************** 185
[M::ha_hist_line] 105: ************************************************************* 208
[M::ha_hist_line] 106: ******************************************************* 188
[M::ha_hist_line] 107: **************************************************************** 221
[M::ha_hist_line] 108: ********************************************************************** 239
[M::ha_hist_line] 109: **************************************************************** 220
[M::ha_hist_line] 110: ********************************************************** 199
[M::ha_hist_line] 111: ******************************************************** 193
[M::ha_hist_line] 112: ************************************************************************* 251
[M::ha_hist_line] 113: **************************************************************************************** 301
[M::ha_hist_line] 114: ************************************************************************* 252
[M::ha_hist_line] 115: ************************************************************************* 251
[M::ha_hist_line] 116: ****************************************************************** 226
[M::ha_hist_line] 117: ************************************************************* 209
[M::ha_hist_line] 118: ************************************************************* 209
[M::ha_hist_line] 119: ************************************************************** 213
[M::ha_hist_line] 120: ***************************************************************** 224
[M::ha_hist_line] 121: ****************************************************** 184
[M::ha_hist_line] 122: **************************************************** 179
[M::ha_hist_line] 123: *************************************************** 175
[M::ha_hist_line] 124: ***************************************************** 181
[M::ha_hist_line] 125: ************************************************** 170
[M::ha_hist_line] 126: ************************************************ 166
[M::ha_hist_line] 127: ******************************************* 147
[M::ha_hist_line] 128: ******************************************** 150
[M::ha_hist_line] 129: ********************************************* 154
[M::ha_hist_line] 130: ************************************************* 169
[M::ha_hist_line] 131: ********************************************* 155
[M::ha_hist_line] 132: *********************************************** 161
[M::ha_hist_line] 133: ************************************** 130
[M::ha_hist_line] 134: ************************************* 127
[M::ha_hist_line] 135: ********************************** 118
[M::ha_hist_line] 136: ********************************* 114
[M::ha_hist_line] 137: ********************************* 113
[M::ha_hist_line] 138: ******************************** 110
[M::ha_hist_line] 139: ******************************* 107
[M::ha_hist_line] 140: ********************************** 115
[M::ha_hist_line] 141: ****************************** 104
[M::ha_hist_line] 142: **************************** 96
[M::ha_hist_line] 143: ************************** 88
[M::ha_hist_line] 144: ********************* 72
[M::ha_hist_line] 145: *********************** 78
[M::ha_hist_line] 146: **************** 56
[M::ha_hist_line] 147: ********************* 73
[M::ha_hist_line] 148: ****************** 61
[M::ha_hist_line] 149: ********************** 76
[M::ha_hist_line] 150: *************** 51
[M::ha_hist_line] 151: ************* 43
[M::ha_hist_line] 152: ************* 45
[M::ha_hist_line] 153: *************** 51
[M::ha_hist_line] 154: ****************** 62
[M::ha_hist_line] 155: **************** 55
[M::ha_hist_line] 156: ****************** 61
[M::ha_hist_line] 157: ************** 48
[M::ha_hist_line] 158: ********** 33
[M::ha_hist_line] 159: ************ 40
[M::ha_hist_line] 160: ********** 36
[M::ha_hist_line] 161: ********** 34
[M::ha_hist_line] 162: ********** 36
[M::ha_hist_line] 163: *********** 39
[M::ha_hist_line] 164: *********** 37
[M::ha_hist_line] 165: ************* 46
[M::ha_hist_line] 166: ********** 35
[M::ha_hist_line] 167: ********* 31
[M::ha_hist_line] 168: *************** 50
[M::ha_hist_line] 169: ************** 49
[M::ha_hist_line] 170: ********** 34
[M::ha_hist_line] 171: ******** 26
[M::ha_hist_line] 172: ************** 49
[M::ha_hist_line] 173: ************ 41
[M::ha_hist_line] 174: ************** 49
[M::ha_hist_line] 175: **************** 55
[M::ha_hist_line] 176: ********** 33
[M::ha_hist_line] 177: ************** 48
[M::ha_hist_line] 178: ************ 40
[M::ha_hist_line] 179: ********** 34
[M::ha_hist_line] 180: ********* 30
[M::ha_hist_line] 181: ************** 47
[M::ha_hist_line] 182: *************** 50
[M::ha_hist_line] 183: ********* 32
[M::ha_hist_line] 184: *********** 39
[M::ha_hist_line] 185: ********* 32
[M::ha_hist_line] 186: ************** 47
[M::ha_hist_line] 187: *************** 50
[M::ha_hist_line] 188: ************* 44
[M::ha_hist_line] 189: ********** 33
[M::ha_hist_line] 190: ************ 40
[M::ha_hist_line] 191: ***** 16
[M::ha_hist_line] 192: ******** 27
[M::ha_hist_line] 193: ******* 24
[M::ha_hist_line] 194: ********** 34
[M::ha_hist_line] 195: ********* 30
[M::ha_hist_line] 196: ********* 32
[M::ha_hist_line] 197: ****** 19
[M::ha_hist_line] 198: ***** 17
[M::ha_hist_line] 199: *** 12
[M::ha_hist_line] 200: *** 12
[M::ha_hist_line] 201: * 5
[M::ha_hist_line] 202: *** 12
[M::ha_hist_line] 203: **** 13
[M::ha_hist_line] 204: **** 15
[M::ha_hist_line] 205: *** 11
[M::ha_hist_line] 206: *** 12
[M::ha_hist_line] 207: ******* 25
[M::ha_hist_line] 208: *** 10
[M::ha_hist_line] 209: ** 8
[M::ha_hist_line] 210: **** 13
[M::ha_hist_line] 211: *** 11
[M::ha_hist_line] 212: ** 7
[M::ha_hist_line] 213: **** 14
[M::ha_hist_line] 214: *** 11
[M::ha_hist_line] 215: **** 13
[M::ha_hist_line] 216: *** 10
[M::ha_hist_line] 217: * 5
[M::ha_hist_line] 218: * 4
[M::ha_hist_line] 219: ***** 18
[M::ha_hist_line] 220: *** 12
[M::ha_hist_line] 221: *** 11
[M::ha_hist_line] 222: **** 15
[M::ha_hist_line] 223: ** 8
[M::ha_hist_line] 224: ** 8
[M::ha_hist_line] 225: * 5
[M::ha_hist_line] 226: * 5
[M::ha_hist_line] 227: * 3
[M::ha_hist_line] 228: *** 9
[M::ha_hist_line] 229: ** 7
[M::ha_hist_line] 230: * 5
[M::ha_hist_line] 231: ** 7
[M::ha_hist_line] 232: ** 7
[M::ha_hist_line] 233: *** 10
[M::ha_hist_line] 234: ** 6
[M::ha_hist_line] 235: ** 6
[M::ha_hist_line] 236: *** 12
[M::ha_hist_line] 237: *** 9
[M::ha_hist_line] 238: ** 6
[M::ha_hist_line] 239: *** 9
[M::ha_hist_line] 240: ***** 18
[M::ha_hist_line] 241: ** 7
[M::ha_hist_line] 242: **** 13
[M::ha_hist_line] 243: ** 7
[M::ha_hist_line] 244: ** 6
[M::ha_hist_line] 245: ** 8
[M::ha_hist_line] 246: ** 7
[M::ha_hist_line] 247: * 5
[M::ha_hist_line] 248: ** 6
[M::ha_hist_line] 249: ** 7
[M::ha_hist_line] 250: * 4
[M::ha_hist_line] rest: ************************************************************************************************> 390
[M::ha_analyze_count] left: count[7] = 289
[M::ha_analyze_count] right: none
[M::ha_pt_gen] peak_hom: 42; peak_het: 7
[M::ha_ct_shrink::41.91812.83] ==> counted 32360 distinct minimizer k-mers
[M::ha_pt_gen::] counting in normal mode
[M::yak_count] collected 2671240 minimizers
[M::ha_pt_gen::42.34412.81] ==> indexed 2666979 positions, counted 32360 distinct minimizer k-mers
[M::ha_assemble::62.031[email protected]] ==> corrected reads for round 2
[M::ha_assemble] # bases: 100594571; # corrected bases: 7379; # recorrected bases: 230
[M::ha_assemble] size of buffer: 0.634GB
[M::yak_count] collected 2671307 minimizers
[M::ha_pt_gen::62.46815.68] ==> counted 35736 distinct minimizer k-mers
[M::ha_pt_gen] count[4095] = 0 (for sanity check)
[M::ha_analyze_count] lowest: count[6] = 254
[M::ha_analyze_count] highest: count[41] = 339
[M::ha_hist_line] 1: ****************************************************************************************************> 3559
[M::ha_hist_line] 2: ****************************************************************************************************> 964
[M::ha_hist_line] 3: ****************************************************************************************************> 546
[M::ha_hist_line] 4: ****************************************************************************************************> 367
[M::ha_hist_line] 5: ****************************************************************************************** 305
[M::ha_hist_line] 6: *************************************************************************** 254
[M::ha_hist_line] 7: ************************************************************************************** 292
[M::ha_hist_line] 8: ******************************************************* 187
[M::ha_hist_line] 9: ***************************************************************** 221
[M::ha_hist_line] 10: ************************************************************ 205
[M::ha_hist_line] 11: ************************************************** 170
[M::ha_hist_line] 12: *************************************************** 174
[M::ha_hist_line] 13: ***************************************************** 180
[M::ha_hist_line] 14: ********************************************** 156
[M::ha_hist_line] 15: ****************************************** 143
[M::ha_hist_line] 16: ******************************************************* 186
[M::ha_hist_line] 17: *************************************************** 172
[M::ha_hist_line] 18: *************************************************************** 213
[M::ha_hist_line] 19: ************************************** 128
[M::ha_hist_line] 20: *************************************************** 173
[M::ha_hist_line] 21: ************************************************* 166
[M::ha_hist_line] 22: ******************************************* 145
[M::ha_hist_line] 23: ************************************* 127
[M::ha_hist_line] 24: ************************************************** 169
[M::ha_hist_line] 25: ***************************************** 139
[M::ha_hist_line] 26: ****************************************** 143
[M::ha_hist_line] 27: ****************************** 102
[M::ha_hist_line] 28: ******************************** 110
[M::ha_hist_line] 29: ********************************** 115
[M::ha_hist_line] 30: ************************************ 122
[M::ha_hist_line] 31: *********************************** 120
[M::ha_hist_line] 32: ************************************ 122
[M::ha_hist_line] 33: ************************************************* 165
[M::ha_hist_line] 34: ************************************************************* 207
[M::ha_hist_line] 35: ************************************************************* 207
[M::ha_hist_line] 36: ************************************************ 162
[M::ha_hist_line] 37: ****************************************************** 184
[M::ha_hist_line] 38: *********************************************************************** 240
[M::ha_hist_line] 39: ************************************************* 166
[M::ha_hist_line] 40: ********************************************************************************** 277
[M::ha_hist_line] 41: **************************************************************************************************** 339
[M::ha_hist_line] 42: ************************************************************************************************** 331
[M::ha_hist_line] 43: ***************************************************************************** 262
[M::ha_hist_line] 44: ******************************************************************** 229
[M::ha_hist_line] 45: ********************************************************************** 237
[M::ha_hist_line] 46: ******************************************************************** 230
[M::ha_hist_line] 47: ************************************************************* 208
[M::ha_hist_line] 48: *********************************************************************** 239
[M::ha_hist_line] 49: *********************************************************** 200
[M::ha_hist_line] 50: *************************************************************** 213
[M::ha_hist_line] 51: ************************************************************ 205
[M::ha_hist_line] 52: ************************************************************* 208
[M::ha_hist_line] 53: *********************************************************** 201
[M::ha_hist_line] 54: ******************************************************* 185
[M::ha_hist_line] 55: ******************************************************* 187
[M::ha_hist_line] 56: ************************************************ 163
[M::ha_hist_line] 57: ***************************************************************** 219
[M::ha_hist_line] 58: ***************************************************** 180
[M::ha_hist_line] 59: ******************************************************************* 227
[M::ha_hist_line] 60: ************************************************************ 202
[M::ha_hist_line] 61: ****************************************************** 184
[M::ha_hist_line] 62: ******************************************************** 191
[M::ha_hist_line] 63: ******************************************************* 186
[M::ha_hist_line] 64: ***************************************************** 181
[M::ha_hist_line] 65: ********************************************************** 198
[M::ha_hist_line] 66: ************************************************************** 209
[M::ha_hist_line] 67: ******************************************************************** 232
[M::ha_hist_line] 68: *********************************************************************** 240
[M::ha_hist_line] 69: ************************************************************************** 252
[M::ha_hist_line] 70: ********************************************************************* 235
[M::ha_hist_line] 71: ************************************************************************** 251
[M::ha_hist_line] 72: ************************************************************************** 250
[M::ha_hist_line] 73: ****************************************************************** 225
[M::ha_hist_line] 74: ************************************************************** 210
[M::ha_hist_line] 75: ************************************************************ 205
[M::ha_hist_line] 76: *************************************************************** 215
[M::ha_hist_line] 77: **************************************************************** 217
[M::ha_hist_line] 78: ***************************************************** 181
[M::ha_hist_line] 79: ********************************************************** 198
[M::ha_hist_line] 80: ************************************************************ 202
[M::ha_hist_line] 81: ****************************************************************************** 264
[M::ha_hist_line] 82: ******************************************************************************** 270
[M::ha_hist_line] 83: ***************************************************************** 221
[M::ha_hist_line] 84: **************************************************************** 216
[M::ha_hist_line] 85: ********************************************************************** 237
[M::ha_hist_line] 86: ***************************************************************** 219
[M::ha_hist_line] 87: *********************************************************************** 240
[M::ha_hist_line] 88: ***************************************************************** 222
[M::ha_hist_line] 89: *************************************************** 174
[M::ha_hist_line] 90: ********************************************************* 193
[M::ha_hist_line] 91: ******************************************** 150
[M::ha_hist_line] 92: ****************************************************** 184
[M::ha_hist_line] 93: ************************************************************ 202
[M::ha_hist_line] 94: *************************************************************** 214
[M::ha_hist_line] 95: ***************************************************************************** 262
[M::ha_hist_line] 96: ************************************************************** 210
[M::ha_hist_line] 97: *********************************************** 161
[M::ha_hist_line] 98: ******************************************************************** 229
[M::ha_hist_line] 99: ********************************************************************* 233
[M::ha_hist_line] 100: ************************************************************************ 244
[M::ha_hist_line] 101: ***************************************************************** 220
[M::ha_hist_line] 102: *************************************************************** 213
[M::ha_hist_line] 103: ************************************************************** 211
[M::ha_hist_line] 104: ****************************************************** 182
[M::ha_hist_line] 105: ************************************************************** 209
[M::ha_hist_line] 106: ******************************************************* 187
[M::ha_hist_line] 107: ****************************************************************** 223
[M::ha_hist_line] 108: ********************************************************************** 236
[M::ha_hist_line] 109: ******************************************************************* 226
[M::ha_hist_line] 110: *********************************************************** 200
[M::ha_hist_line] 111: ******************************************************* 186
[M::ha_hist_line] 112: *************************************************************************** 254
[M::ha_hist_line] 113: *************************************************************************************** 295
[M::ha_hist_line] 114: ************************************************************************** 250
[M::ha_hist_line] 115: ************************************************************************* 246
[M::ha_hist_line] 116: ********************************************************************** 238
[M::ha_hist_line] 117: ************************************************************** 210
[M::ha_hist_line] 118: ************************************************************* 206
[M::ha_hist_line] 119: ************************************************************** 211
[M::ha_hist_line] 120: ****************************************************************** 224
[M::ha_hist_line] 121: ****************************************************** 183
[M::ha_hist_line] 122: ******************************************************** 189
[M::ha_hist_line] 123: **************************************************** 175
[M::ha_hist_line] 124: **************************************************** 176
[M::ha_hist_line] 125: *************************************************** 174
[M::ha_hist_line] 126: ************************************************ 163
[M::ha_hist_line] 127: ******************************************* 145
[M::ha_hist_line] 128: ******************************************* 146
[M::ha_hist_line] 129: ********************************************** 155
[M::ha_hist_line] 130: ************************************************** 169
[M::ha_hist_line] 131: ********************************************** 155
[M::ha_hist_line] 132: ************************************************ 164
[M::ha_hist_line] 133: ***************************************** 140
[M::ha_hist_line] 134: ************************************ 123
[M::ha_hist_line] 135: ******************************** 108
[M::ha_hist_line] 136: ********************************** 115
[M::ha_hist_line] 137: *********************************** 117
[M::ha_hist_line] 138: ******************************** 109
[M::ha_hist_line] 139: ******************************** 110
[M::ha_hist_line] 140: ********************************* 111
[M::ha_hist_line] 141: ******************************** 109
[M::ha_hist_line] 142: *************************** 93
[M::ha_hist_line] 143: ************************** 87
[M::ha_hist_line] 144: ********************** 74
[M::ha_hist_line] 145: ************************ 80
[M::ha_hist_line] 146: ***************** 57
[M::ha_hist_line] 147: ********************* 71
[M::ha_hist_line] 148: ****************** 60
[M::ha_hist_line] 149: ********************* 72
[M::ha_hist_line] 150: **************** 55
[M::ha_hist_line] 151: ************** 47
[M::ha_hist_line] 152: ************ 39
[M::ha_hist_line] 153: ***************** 56
[M::ha_hist_line] 154: ******************* 65
[M::ha_hist_line] 155: ***************** 56
[M::ha_hist_line] 156: ****************** 61
[M::ha_hist_line] 157: ************** 47
[M::ha_hist_line] 158: ********** 34
[M::ha_hist_line] 159: ************ 40
[M::ha_hist_line] 160: ********** 34
[M::ha_hist_line] 161: ********** 35
[M::ha_hist_line] 162: *********** 37
[M::ha_hist_line] 163: *********** 37
[M::ha_hist_line] 164: *********** 38
[M::ha_hist_line] 165: ************* 44
[M::ha_hist_line] 166: ********** 35
[M::ha_hist_line] 167: ********* 32
[M::ha_hist_line] 168: ************* 45
[M::ha_hist_line] 169: **************** 53
[M::ha_hist_line] 170: *********** 37
[M::ha_hist_line] 171: ******** 26
[M::ha_hist_line] 172: ************* 43
[M::ha_hist_line] 173: ************ 42
[M::ha_hist_line] 174: ************** 49
[M::ha_hist_line] 175: **************** 54
[M::ha_hist_line] 176: ********* 32
[M::ha_hist_line] 177: **************** 54
[M::ha_hist_line] 178: ************ 41
[M::ha_hist_line] 179: ********** 33
[M::ha_hist_line] 180: ********* 30
[M::ha_hist_line] 181: ************** 48
[M::ha_hist_line] 182: *************** 50
[M::ha_hist_line] 183: ********* 31
[M::ha_hist_line] 184: ************ 39
[M::ha_hist_line] 185: ********** 33
[M::ha_hist_line] 186: ************** 47
[M::ha_hist_line] 187: ************** 49
[M::ha_hist_line] 188: ************ 41
[M::ha_hist_line] 189: ********* 31
[M::ha_hist_line] 190: ************* 45
[M::ha_hist_line] 191: ***** 17
[M::ha_hist_line] 192: ******** 27
[M::ha_hist_line] 193: ******* 24
[M::ha_hist_line] 194: ********* 32
[M::ha_hist_line] 195: ********* 31
[M::ha_hist_line] 196: ********** 33
[M::ha_hist_line] 197: ****** 19
[M::ha_hist_line] 198: ***** 16
[M::ha_hist_line] 199: *** 11
[M::ha_hist_line] 200: **** 14
[M::ha_hist_line] 201: * 4
[M::ha_hist_line] 202: **** 12
[M::ha_hist_line] 203: **** 13
[M::ha_hist_line] 204: ***** 16
[M::ha_hist_line] 205: *** 11
[M::ha_hist_line] 206: *** 11
[M::ha_hist_line] 207: ******** 26
[M::ha_hist_line] 208: *** 9
[M::ha_hist_line] 209: ** 7
[M::ha_hist_line] 210: **** 15
[M::ha_hist_line] 211: *** 10
[M::ha_hist_line] 212: ** 8
[M::ha_hist_line] 213: **** 14
[M::ha_hist_line] 214: *** 10
[M::ha_hist_line] 215: *** 10
[M::ha_hist_line] 216: *** 11
[M::ha_hist_line] 217: ** 8
[M::ha_hist_line] 218: * 4
[M::ha_hist_line] 219: ***** 18
[M::ha_hist_line] 220: **** 12
[M::ha_hist_line] 221: ** 8
[M::ha_hist_line] 222: **** 15
[M::ha_hist_line] 223: *** 10
[M::ha_hist_line] 224: *** 9
[M::ha_hist_line] 225: * 4
[M::ha_hist_line] 226: ** 6
[M::ha_hist_line] 227: * 3
[M::ha_hist_line] 228: *** 9
[M::ha_hist_line] 229: ** 6
[M::ha_hist_line] 230: ** 6
[M::ha_hist_line] 231: ** 7
[M::ha_hist_line] 232: ** 7
[M::ha_hist_line] 233: *** 10
[M::ha_hist_line] 234: * 5
[M::ha_hist_line] 235: ** 7
[M::ha_hist_line] 236: *** 11
[M::ha_hist_line] 237: *** 9
[M::ha_hist_line] 238: ** 7
[M::ha_hist_line] 239: *** 9
[M::ha_hist_line] 240: **** 15
[M::ha_hist_line] 241: *** 10
[M::ha_hist_line] 242: **** 13
[M::ha_hist_line] 243: ** 7
[M::ha_hist_line] 244: ** 6
[M::ha_hist_line] 245: ** 6
[M::ha_hist_line] 246: ** 7
[M::ha_hist_line] 247: ** 7
[M::ha_hist_line] 248: ** 6
[M::ha_hist_line] 249: ** 7
[M::ha_hist_line] 250: * 4
[M::ha_hist_line] rest: ************************************************************************************************> 390
[M::ha_analyze_count] left: count[7] = 292
[M::ha_analyze_count] right: none
[M::ha_pt_gen] peak_hom: 41; peak_het: 7
[M::ha_ct_shrink::62.48615.67] ==> counted 32177 distinct minimizer k-mers
[M::ha_pt_gen::] counting in normal mode
[M::yak_count] collected 2671307 minimizers
[M::ha_pt_gen::62.90115.64] ==> indexed 2667748 positions, counted 32177 distinct minimizer k-mers
[M::ha_assemble::87.136[email protected]] ==> corrected reads for round 3
[M::ha_assemble] # bases: 100597775; # corrected bases: 987; # recorrected bases: 76
[M::ha_assemble] size of buffer: 0.622GB
[M::yak_count] collected 2671264 minimizers
[M::ha_pt_gen::87.59816.36] ==> counted 35677 distinct minimizer k-mers
[M::ha_pt_gen] count[4095] = 0 (for sanity check)
[M::ha_analyze_count] lowest: count[6] = 255
[M::ha_analyze_count] highest: count[41] = 339
[M::ha_hist_line] 1: ****************************************************************************************************> 3525
[M::ha_hist_line] 2: ****************************************************************************************************> 954
[M::ha_hist_line] 3: ****************************************************************************************************> 543
[M::ha_hist_line] 4: ****************************************************************************************************> 362
[M::ha_hist_line] 5: ***************************************************************************************** 303
[M::ha_hist_line] 6: *************************************************************************** 255
[M::ha_hist_line] 7: ************************************************************************************* 288
[M::ha_hist_line] 8: ******************************************************* 186
[M::ha_hist_line] 9: ***************************************************************** 221
[M::ha_hist_line] 10: ************************************************************ 205
[M::ha_hist_line] 11: ************************************************** 170
[M::ha_hist_line] 12: *************************************************** 174
[M::ha_hist_line] 13: ***************************************************** 180
[M::ha_hist_line] 14: ********************************************** 156
[M::ha_hist_line] 15: ******************************************* 145
[M::ha_hist_line] 16: ******************************************************* 186
[M::ha_hist_line] 17: ************************************************** 171
[M::ha_hist_line] 18: *************************************************************** 213
[M::ha_hist_line] 19: ************************************* 127
[M::ha_hist_line] 20: *************************************************** 173
[M::ha_hist_line] 21: ************************************************* 165
[M::ha_hist_line] 22: ******************************************* 145
[M::ha_hist_line] 23: ************************************* 127
[M::ha_hist_line] 24: ************************************************** 170
[M::ha_hist_line] 25: ***************************************** 138
[M::ha_hist_line] 26: ****************************************** 143
[M::ha_hist_line] 27: ****************************** 102
[M::ha_hist_line] 28: ********************************* 112
[M::ha_hist_line] 29: ********************************** 114
[M::ha_hist_line] 30: ************************************ 121
[M::ha_hist_line] 31: *********************************** 120
[M::ha_hist_line] 32: ************************************* 124
[M::ha_hist_line] 33: ************************************************ 163
[M::ha_hist_line] 34: ************************************************************** 210
[M::ha_hist_line] 35: ************************************************************* 207
[M::ha_hist_line] 36: *********************************************** 158
[M::ha_hist_line] 37: ******************************************************* 185
[M::ha_hist_line] 38: *********************************************************************** 240
[M::ha_hist_line] 39: ************************************************* 166
[M::ha_hist_line] 40: ********************************************************************************** 277
[M::ha_hist_line] 41: **************************************************************************************************** 339
[M::ha_hist_line] 42: ************************************************************************************************* 328
[M::ha_hist_line] 43: ****************************************************************************** 265
[M::ha_hist_line] 44: ******************************************************************* 227
[M::ha_hist_line] 45: *********************************************************************** 240
[M::ha_hist_line] 46: ******************************************************************** 229
[M::ha_hist_line] 47: ************************************************************* 208
[M::ha_hist_line] 48: *********************************************************************** 239
[M::ha_hist_line] 49: *********************************************************** 200
[M::ha_hist_line] 50: *************************************************************** 212
[M::ha_hist_line] 51: ************************************************************ 203
[M::ha_hist_line] 52: ************************************************************** 210
[M::ha_hist_line] 53: ************************************************************ 202
[M::ha_hist_line] 54: ******************************************************* 185
[M::ha_hist_line] 55: ******************************************************* 187
[M::ha_hist_line] 56: ************************************************ 163
[M::ha_hist_line] 57: ***************************************************************** 219
[M::ha_hist_line] 58: ***************************************************** 180
[M::ha_hist_line] 59: ******************************************************************* 227
[M::ha_hist_line] 60: ************************************************************ 202
[M::ha_hist_line] 61: ****************************************************** 183
[M::ha_hist_line] 62: ********************************************************* 192
[M::ha_hist_line] 63: ******************************************************* 186
[M::ha_hist_line] 64: ***************************************************** 181
[M::ha_hist_line] 65: *********************************************************** 199
[M::ha_hist_line] 66: ************************************************************ 205
[M::ha_hist_line] 67: ********************************************************************* 234
[M::ha_hist_line] 68: *********************************************************************** 240
[M::ha_hist_line] 69: ************************************************************************** 252
[M::ha_hist_line] 70: ********************************************************************* 235
[M::ha_hist_line] 71: ************************************************************************** 252
[M::ha_hist_line] 72: ************************************************************************** 250
[M::ha_hist_line] 73: ******************************************************************* 226
[M::ha_hist_line] 74: ************************************************************** 209
[M::ha_hist_line] 75: ************************************************************ 205
[M::ha_hist_line] 76: *************************************************************** 215
[M::ha_hist_line] 77: ***************************************************************** 219
[M::ha_hist_line] 78: ***************************************************** 179
[M::ha_hist_line] 79: ********************************************************** 198
[M::ha_hist_line] 80: ************************************************************ 202
[M::ha_hist_line] 81: ****************************************************************************** 264
[M::ha_hist_line] 82: ******************************************************************************** 272
[M::ha_hist_line] 83: ***************************************************************** 219
[M::ha_hist_line] 84: **************************************************************** 216
[M::ha_hist_line] 85: ********************************************************************** 238
[M::ha_hist_line] 86: **************************************************************** 218
[M::ha_hist_line] 87: *********************************************************************** 239
[M::ha_hist_line] 88: ****************************************************************** 223
[M::ha_hist_line] 89: *************************************************** 174
[M::ha_hist_line] 90: ********************************************************* 193
[M::ha_hist_line] 91: ******************************************** 150
[M::ha_hist_line] 92: ******************************************************* 185
[M::ha_hist_line] 93: *********************************************************** 201
[M::ha_hist_line] 94: *************************************************************** 213
[M::ha_hist_line] 95: ***************************************************************************** 262
[M::ha_hist_line] 96: ************************************************************** 210
[M::ha_hist_line] 97: *********************************************** 160
[M::ha_hist_line] 98: ******************************************************************* 227
[M::ha_hist_line] 99: ********************************************************************* 235
[M::ha_hist_line] 100: *********************************************************************** 241
[M::ha_hist_line] 101: ***************************************************************** 221
[M::ha_hist_line] 102: *************************************************************** 215
[M::ha_hist_line] 103: ************************************************************** 210
[M::ha_hist_line] 104: ****************************************************** 182
[M::ha_hist_line] 105: *************************************************************** 212
[M::ha_hist_line] 106: ******************************************************* 187
[M::ha_hist_line] 107: ***************************************************************** 222
[M::ha_hist_line] 108: ********************************************************************** 237
[M::ha_hist_line] 109: ******************************************************************* 226
[M::ha_hist_line] 110: *********************************************************** 200
[M::ha_hist_line] 111: ******************************************************* 186
[M::ha_hist_line] 112: ************************************************************************** 252
[M::ha_hist_line] 113: *************************************************************************************** 296
[M::ha_hist_line] 114: ************************************************************************* 249
[M::ha_hist_line] 115: ************************************************************************* 248
[M::ha_hist_line] 116: ********************************************************************** 238
[M::ha_hist_line] 117: ************************************************************** 210
[M::ha_hist_line] 118: ************************************************************* 206
[M::ha_hist_line] 119: ************************************************************** 211
[M::ha_hist_line] 120: ****************************************************************** 224
[M::ha_hist_line] 121: ****************************************************** 183
[M::ha_hist_line] 122: ******************************************************** 189
[M::ha_hist_line] 123: **************************************************** 175
[M::ha_hist_line] 124: **************************************************** 176
[M::ha_hist_line] 125: *************************************************** 174
[M::ha_hist_line] 126: ************************************************ 163
[M::ha_hist_line] 127: ****************************************** 144
[M::ha_hist_line] 128: ******************************************* 145
[M::ha_hist_line] 129: ********************************************** 156
[M::ha_hist_line] 130: ************************************************** 169
[M::ha_hist_line] 131: ********************************************** 155
[M::ha_hist_line] 132: ************************************************ 162
[M::ha_hist_line] 133: **************************************** 137
[M::ha_hist_line] 134: ************************************* 124
[M::ha_hist_line] 135: ********************************* 111
[M::ha_hist_line] 136: *********************************** 117
[M::ha_hist_line] 137: ********************************** 114
[M::ha_hist_line] 138: ********************************* 111
[M::ha_hist_line] 139: ******************************** 109
[M::ha_hist_line] 140: ********************************* 113
[M::ha_hist_line] 141: ******************************** 107
[M::ha_hist_line] 142: **************************** 94
[M::ha_hist_line] 143: ************************** 88
[M::ha_hist_line] 144: ********************** 73
[M::ha_hist_line] 145: ************************ 80
[M::ha_hist_line] 146: ***************** 57
[M::ha_hist_line] 147: ********************* 72
[M::ha_hist_line] 148: ***************** 59
[M::ha_hist_line] 149: ********************* 70
[M::ha_hist_line] 150: ***************** 56
[M::ha_hist_line] 151: ************* 45
[M::ha_hist_line] 152: ************ 41
[M::ha_hist_line] 153: ***************** 56
[M::ha_hist_line] 154: ******************* 65
[M::ha_hist_line] 155: ***************** 58
[M::ha_hist_line] 156: ****************** 61
[M::ha_hist_line] 157: ************** 47
[M::ha_hist_line] 158: ********** 34
[M::ha_hist_line] 159: ************ 40
[M::ha_hist_line] 160: ********** 34
[M::ha_hist_line] 161: ********** 34
[M::ha_hist_line] 162: *********** 38
[M::ha_hist_line] 163: *********** 37
[M::ha_hist_line] 164: *********** 36
[M::ha_hist_line] 165: ************* 45
[M::ha_hist_line] 166: ********** 35
[M::ha_hist_line] 167: ********* 31
[M::ha_hist_line] 168: ************* 45
[M::ha_hist_line] 169: ************** 49
[M::ha_hist_line] 170: ************ 41
[M::ha_hist_line] 171: ******** 27
[M::ha_hist_line] 172: ************ 42
[M::ha_hist_line] 173: ************* 43
[M::ha_hist_line] 174: ************** 49
[M::ha_hist_line] 175: **************** 54
[M::ha_hist_line] 176: ********** 33
[M::ha_hist_line] 177: **************** 54
[M::ha_hist_line] 178: ************ 41
[M::ha_hist_line] 179: ********** 33
[M::ha_hist_line] 180: ********* 30
[M::ha_hist_line] 181: ************** 48
[M::ha_hist_line] 182: *************** 50
[M::ha_hist_line] 183: ********* 31
[M::ha_hist_line] 184: ************ 39
[M::ha_hist_line] 185: ********** 33
[M::ha_hist_line] 186: ************** 47
[M::ha_hist_line] 187: ************** 49
[M::ha_hist_line] 188: ************ 41
[M::ha_hist_line] 189: ********* 31
[M::ha_hist_line] 190: ************* 45
[M::ha_hist_line] 191: ***** 17
[M::ha_hist_line] 192: ******** 27
[M::ha_hist_line] 193: ******* 24
[M::ha_hist_line] 194: ********* 32
[M::ha_hist_line] 195: ********* 31
[M::ha_hist_line] 196: ********** 33
[M::ha_hist_line] 197: ****** 19
[M::ha_hist_line] 198: ***** 16
[M::ha_hist_line] 199: *** 11
[M::ha_hist_line] 200: **** 14
[M::ha_hist_line] 201: * 4
[M::ha_hist_line] 202: **** 12
[M::ha_hist_line] 203: **** 13
[M::ha_hist_line] 204: ***** 16
[M::ha_hist_line] 205: *** 11
[M::ha_hist_line] 206: *** 11
[M::ha_hist_line] 207: ******** 26
[M::ha_hist_line] 208: *** 9
[M::ha_hist_line] 209: ** 7
[M::ha_hist_line] 210: **** 15
[M::ha_hist_line] 211: *** 10
[M::ha_hist_line] 212: ** 8
[M::ha_hist_line] 213: **** 14
[M::ha_hist_line] 214: *** 10
[M::ha_hist_line] 215: *** 10
[M::ha_hist_line] 216: *** 11
[M::ha_hist_line] 217: ** 8
[M::ha_hist_line] 218: * 4
[M::ha_hist_line] 219: ***** 18
[M::ha_hist_line] 220: **** 12
[M::ha_hist_line] 221: ** 8
[M::ha_hist_line] 222: **** 15
[M::ha_hist_line] 223: *** 10
[M::ha_hist_line] 224: *** 9
[M::ha_hist_line] 225: * 4
[M::ha_hist_line] 226: ** 6
[M::ha_hist_line] 227: * 3
[M::ha_hist_line] 228: *** 9
[M::ha_hist_line] 229: ** 6
[M::ha_hist_line] 230: ** 6
[M::ha_hist_line] 231: ** 7
[M::ha_hist_line] 232: ** 7
[M::ha_hist_line] 233: *** 10
[M::ha_hist_line] 234: * 5
[M::ha_hist_line] 235: ** 7
[M::ha_hist_line] 236: *** 11
[M::ha_hist_line] 237: *** 9
[M::ha_hist_line] 238: ** 7
[M::ha_hist_line] 239: *** 9
[M::ha_hist_line] 240: **** 15
[M::ha_hist_line] 241: *** 10
[M::ha_hist_line] 242: **** 13
[M::ha_hist_line] 243: ** 7
[M::ha_hist_line] 244: ** 6
[M::ha_hist_line] 245: ** 6
[M::ha_hist_line] 246: ** 7
[M::ha_hist_line] 247: ** 7
[M::ha_hist_line] 248: ** 6
[M::ha_hist_line] 249: ** 7
[M::ha_hist_line] 250: * 4
[M::ha_hist_line] rest: *************************************************************************************************> 390
[M::ha_analyze_count] left: count[7] = 288
[M::ha_analyze_count] right: none
[M::ha_pt_gen] peak_hom: 41; peak_het: 7
[M::ha_ct_shrink::87.61716.36] ==> counted 32152 distinct minimizer k-mers
[M::ha_pt_gen::] counting in normal mode
[M::yak_count] collected 2671264 minimizers
[M::ha_pt_gen::88.08516.32] ==> indexed 2667739 positions, counted 32152 distinct minimizer k-mers
[M::ha_assemble::93.465[email protected]] ==> found overlaps for the final round
[M::ha_print_ovlp_stat] # overlaps: 3951894
[M::ha_print_ovlp_stat] # strong overlaps: 1885331
[M::ha_print_ovlp_stat] # weak overlaps: 2066563
[M::ha_print_ovlp_stat] # exact overlaps: 3897966
[M::ha_print_ovlp_stat] # inexact overlaps: 53928
[M::ha_print_ovlp_stat] # overlaps without large indels: 3951490
[M::ha_print_ovlp_stat] # reverse overlaps: 491953
[M::ha_opt_update_cov_min] updated max_n_chain to 41000
Writing reads to disk...
Reads has been written.
Writing ma_hit_ts to disk...
ma_hit_ts has been written.
Writing ma_hit_ts to disk...
ma_hit_ts has been written.
bin files have been written.
[M::purge_dups] homozygous read coverage threshold: 40
[M::purge_dups] purge duplication coverage threshold: 51
[M::ug_ext_gfa::] # tips::9
Writing raw unitig GFA to disk...
Writing processed unitig GFA to disk...
[M::purge_dups] homozygous read coverage threshold: 40
[M::purge_dups] purge duplication coverage threshold: 51
[M::mc_solve:: # edges: 0]
[M::mc_solve_core_adv::0.000] ==> Partition
[M::adjust_utg_by_primary] primary contig coverage range: [34, infinity]
Writing primary contig GFA to disk...
Writing alternate contig GFA to disk...
Inconsistency threshold for low-quality regions in BED files: 70%
[M::main] Version: 0.19.8-r603
[M::main] CMD: /u/project/geschwind/leqi0001/software/hifiasm/hifiasm -o /u/project/geschwind/leqi0001/longreads/assembly_phased/GIH.92.C2.hap1 -t 32 --primary --hg-size 2m -D 1000 -N 20000 GIH.92.C2.hap1.fastq.gz
[M::main] Real time: 100.692 sec; CPU: 1557.883 sec; Peak RSS: 16.483 GB
[M::ha_analyze_count] lowest: count[6] = 7905
[M::ha_analyze_count] highest: count[7] = 8120
[M::ha_hist_line] 2: ****************************************************************************************************> 92907
[M::ha_hist_line] 3: ****************************************************************************************************> 21567
[M::ha_hist_line] 4: ****************************************************************************************************> 12721
[M::ha_hist_line] 5: *************************************************************************************************> 9037
[M::ha_hist_line] 6: ************************************************************************************************* 7905
[M::ha_hist_line] 7: **************************************************************************************************** 8120
[M::ha_hist_line] 8: ************************************************************* 4926
[M::ha_hist_line] 9: *********************************************************************** 5744
[M::ha_hist_line] 10: **************************************************************************** 6182
[M::ha_hist_line] 11: ******************************************************************* 5443
[M::ha_hist_line] 12: *********************************************************************** 5735
[M::ha_hist_line] 13: *********************************************************************** 5786
[M::ha_hist_line] 14: ***************************************************** 4281
[M::ha_hist_line] 15: *************************************************************** 5104
[M::ha_hist_line] 16: ************************************************************ 4866
[M::ha_hist_line] 17: ******************************************* 3489
[M::ha_hist_line] 18: ********************************************************* 4646
[M::ha_hist_line] 19: ************************************************ 3890
[M::ha_hist_line] 20: ******************************************************** 4585
[M::ha_hist_line] 21: ******************************************************* 4491
[M::ha_hist_line] 22: ***************************************** 3319
[M::ha_hist_line] 23: *************************************************** 4150
[M::ha_hist_line] 24: ************************************************* 3970
[M::ha_hist_line] 25: ********************************************** 3763
[M::ha_hist_line] 26: ************************************************* 4008
[M::ha_hist_line] 27: ************************************************************ 4840
[M::ha_hist_line] 28: ****************************************************** 4403
[M::ha_hist_line] 29: *********************************************************** 4806
[M::ha_hist_line] 30: ********************************************** 3755
[M::ha_hist_line] 31: ***************************************************** 4267
[M::ha_hist_line] 32: ******************************************************* 4436
[M::ha_hist_line] 33: ********************************************************* 4661
[M::ha_hist_line] 34: ****************************************************************** 5322
[M::ha_hist_line] 35: *********************************************************************************** 6734
[M::ha_hist_line] 36: ******************************************************************************* 6377
[M::ha_hist_line] 37: ****************************************************************************** 6372
[M::ha_hist_line] 38: ******************************************************************************* 6446
[M::ha_hist_line] 39: ******************************************************************************* 6429
[M::ha_hist_line] 40: **************************************************************************** 6205
[M::ha_hist_line] 41: *********************************************************************** 5789
[M::ha_hist_line] 42: ********************************************************************************* 6587
[M::ha_hist_line] 43: ********************************************************************************* 6558
[M::ha_hist_line] 44: ************************************************************************* 5952
[M::ha_hist_line] 45: ********************************************************************** 5646
[M::ha_hist_line] 46: *************************************************************************** 6111
[M::ha_hist_line] 47: *********************************************************************** 5739
[M::ha_hist_line] 48: *********************************************************************** 5731
[M::ha_hist_line] 49: ************************************************************************ 5884
[M::ha_hist_line] 50: ******************************************************************* 5444
[M::ha_hist_line] 51: ******************************************************************** 5558
[M::ha_hist_line] 52: ************************************************************************* 5959
[M::ha_hist_line] 53: ***************************************************************************** 6265
[M::ha_hist_line] 54: ************************************************************** 5037
[M::ha_hist_line] 55: *************************************************************** 5124
[M::ha_hist_line] 56: ************************************************************************ 5823
[M::ha_hist_line] 57: ************************************************************************** 5978
[M::ha_hist_line] 58: ***************************************************************************** 6282
[M::ha_hist_line] 59: *********************************************************************** 5787
[M::ha_hist_line] 60: *************************************************************************** 6060
[M::ha_hist_line] 61: ********************************************************************* 5571
[M::ha_hist_line] 62: ************************************************************************* 5915
[M::ha_hist_line] 63: ************************************************************************* 5899
[M::ha_hist_line] 64: ******************************************************************************* 6402
[M::ha_hist_line] 65: ******************************************************************* 5443
[M::ha_hist_line] 66: ******************************************************************** 5546
[M::ha_hist_line] 67: ****************************************************************** 5319
[M::ha_hist_line] 68: ***************************************************************************** 6291
[M::ha_hist_line] 69: ************************************************************************ 5826
[M::ha_hist_line] 70: ******************************************************************** 5538
[M::ha_hist_line] 71: ************************************************************************ 5854
[M::ha_hist_line] 72: ************************************************************************** 6029
[M::ha_hist_line] 73: ***************************************************************************** 6217
[M::ha_hist_line] 74: ****************************************************************************** 6335
[M::ha_hist_line] 75: ****************************************************************************** 6369
[M::ha_hist_line] 76: *************************************************************************** 6083
[M::ha_hist_line] 77: ************************************************************************************ 6835
[M::ha_hist_line] 78: ************************************************************************************* 6879
[M::ha_hist_line] 79: ************************************************************************** 6040
[M::ha_hist_line] 80: *************************************************************************** 6050
[M::ha_hist_line] 81: *************************************************************************** 6111
[M::ha_hist_line] 82: ****************************************************************** 5377
[M::ha_hist_line] 83: *********************************************************** 4751
[M::ha_hist_line] 84: ************************************************************* 4947
[M::ha_hist_line] 85: ************************************************************* 4939
[M::ha_hist_line] 86: ************************************************************** 5034
[M::ha_hist_line] 87: ************************************************************* 4943
[M::ha_hist_line] 88: **************************************************************** 5162
[M::ha_hist_line] 89: ************************************************************************* 5923
[M::ha_hist_line] 90: **************************************************************************** 6161
[M::ha_hist_line] 91: *************************************************************************** 6081
[M::ha_hist_line] 92: ********************************************************************* 5570
[M::ha_hist_line] 93: *************************************************************************** 6052
[M::ha_hist_line] 94: *************************************************************************** 6104
[M::ha_hist_line] 95: **************************************************************************** 6138
[M::ha_hist_line] 96: *********************************************************************** 5781
[M::ha_hist_line] 97: ******************************************************************** 5562
[M::ha_hist_line] 98: ************************************************************************ 5885
[M::ha_hist_line] 99: *********************************************************************** 5763
[M::ha_hist_line] 100: ******************************************************************** 5550
[M::ha_hist_line] 101: ********************************************************************** 5687
[M::ha_hist_line] 102: **************************************************************** 5167
[M::ha_hist_line] 103: ******************************************************************** 5560
[M::ha_hist_line] 104: ********************************************************************** 5688
[M::ha_hist_line] 105: ********************************************************************* 5615
[M::ha_hist_line] 106: ***************************************************************** 5304
[M::ha_hist_line] 107: ******************************************************************* 5421
[M::ha_hist_line] 108: **************************************************************************** 6147
[M::ha_hist_line] 109: ********************************************************************** 5710
[M::ha_hist_line] 110: *************************************************************** 5101
[M::ha_hist_line] 111: ************************************************************ 4885
[M::ha_hist_line] 112: ************************************************** 4020
[M::ha_hist_line] 113: ************************************************** 4036
[M::ha_hist_line] 114: ***************************************************** 4317
[M::ha_hist_line] 115: ************************************************* 3940
[M::ha_hist_line] 116: ******************************************************* 4441
[M::ha_hist_line] 117: ****************************************************** 4369
[M::ha_hist_line] 118: ********************************************** 3746
[M::ha_hist_line] 119: ********************************************* 3633
[M::ha_hist_line] 120: ********************************************* 3617
[M::ha_hist_line] 121: ******************************************** 3544
[M::ha_hist_line] 122: ************************************** 3088
[M::ha_hist_line] 123: ********************************************* 3644
[M::ha_hist_line] 124: ********************************************* 3647
[M::ha_hist_line] 125: ******************************************* 3474
[M::ha_hist_line] 126: **************************************** 3260
[M::ha_hist_line] 127: *************************************** 3181
[M::ha_hist_line] 128: ******************************************** 3588
[M::ha_hist_line] 129: ****************************************** 3393
[M::ha_hist_line] 130: *************************************** 3201
[M::ha_hist_line] 131: ************************************** 3124
[M::ha_hist_line] 132: ******************************* 2540
[M::ha_hist_line] 133: ****************************** 2438
[M::ha_hist_line] 134: ********************************* 2681
[M::ha_hist_line] 135: ********************************** 2730
[M::ha_hist_line] 136: ******************************** 2623
[M::ha_hist_line] 137: ********************************** 2726
[M::ha_hist_line] 138: ******************************** 2560
[M::ha_hist_line] 139: ****************************** 2447
[M::ha_hist_line] 140: ************************* 2025
[M::ha_hist_line] 141: ********************** 1797
[M::ha_hist_line] 142: ********************** 1778
[M::ha_hist_line] 143: ******************** 1630
[M::ha_hist_line] 144: ********************* 1682
[M::ha_hist_line] 145: *********************** 1874
[M::ha_hist_line] 146: ************************ 1963
[M::ha_hist_line] 147: ********************** 1752
[M::ha_hist_line] 148: ********************* 1725
[M::ha_hist_line] 149: ****************** 1463
[M::ha_hist_line] 150: ******************** 1630
[M::ha_hist_line] 151: ******************* 1574
[M::ha_hist_line] 152: *************** 1253
[M::ha_hist_line] 153: ************** 1108
[M::ha_hist_line] 154: *************** 1195
[M::ha_hist_line] 155: ************* 1088
[M::ha_hist_line] 156: ************ 976
[M::ha_hist_line] 157: ************ 953
[M::ha_hist_line] 158: ************ 960
[M::ha_hist_line] 159: ************* 1042
[M::ha_hist_line] 160: ************** 1157
[M::ha_hist_line] 161: ************** 1110
[M::ha_hist_line] 162: ************ 999
[M::ha_hist_line] 163: ********** 834
[M::ha_hist_line] 164: ************** 1139
[M::ha_hist_line] 165: *************** 1193
[M::ha_hist_line] 166: ************** 1109
[M::ha_hist_line] 167: **************** 1259
[M::ha_hist_line] 168: ************** 1124
[M::ha_hist_line] 169: ************** 1145
[M::ha_hist_line] 170: ************ 982
[M::ha_hist_line] 171: ******** 686
[M::ha_hist_line] 172: ******** 684
[M::ha_hist_line] 173: ********* 726
[M::ha_hist_line] 174: *********** 907
[M::ha_hist_line] 175: ************ 952
[M::ha_hist_line] 176: ********** 811
[M::ha_hist_line] 177: ********** 810
[M::ha_hist_line] 178: *********** 922
[M::ha_hist_line] 179: ************* 1078
[M::ha_hist_line] 180: ************ 974
[M::ha_hist_line] 181: *********** 887
[M::ha_hist_line] 182: ********** 784
[M::ha_hist_line] 183: ******* 591
[M::ha_hist_line] 184: ********* 693
[M::ha_hist_line] 185: ******** 622
[M::ha_hist_line] 186: ********* 691
[M::ha_hist_line] 187: ******* 586
[M::ha_hist_line] 188: ******** 617
[M::ha_hist_line] 189: ******* 567
[M::ha_hist_line] 190: ******** 623
[M::ha_hist_line] 191: ******** 630
[M::ha_hist_line] 192: ******* 591
[M::ha_hist_line] 193: ******** 663
[M::ha_hist_line] 194: ******* 568
[M::ha_hist_line] 195: ****** 502
[M::ha_hist_line] 196: **** 351
[M::ha_hist_line] 197: **** 343
[M::ha_hist_line] 198: **** 335
[M::ha_hist_line] 199: **** 356
[M::ha_hist_line] 200: ***** 380
[M::ha_hist_line] 201: ***** 370
[M::ha_hist_line] 202: ***** 436
[M::ha_hist_line] 203: ****** 470
[M::ha_hist_line] 204: ***** 416
[M::ha_hist_line] 205: ****** 469
[M::ha_hist_line] 206: ******* 585
[M::ha_hist_line] 207: ****** 485
[M::ha_hist_line] 208: ***** 396
[M::ha_hist_line] 209: **** 300
[M::ha_hist_line] 210: **** 344
[M::ha_hist_line] 211: *** 222
[M::ha_hist_line] 212: *** 275
[M::ha_hist_line] 213: *** 277
[M::ha_hist_line] 214: **** 339
[M::ha_hist_line] 215: ***** 413
[M::ha_hist_line] 216: ****** 450
[M::ha_hist_line] 217: ***** 432
[M::ha_hist_line] 218: ***** 439
[M::ha_hist_line] 219: ***** 404
[M::ha_hist_line] 220: ***** 433
[M::ha_hist_line] 221: ***** 378
[M::ha_hist_line] 222: *** 241
[M::ha_hist_line] 223: *** 241
[M::ha_hist_line] 224: *** 251
[M::ha_hist_line] 225: **** 289
[M::ha_hist_line] 226: *** 274
[M::ha_hist_line] 227: **** 352
[M::ha_hist_line] 228: *** 258
[M::ha_hist_line] 229: ***** 386
[M::ha_hist_line] 230: **** 338
[M::ha_hist_line] 231: **** 344
[M::ha_hist_line] 232: **** 350
[M::ha_hist_line] 233: ***** 411
[M::ha_hist_line] 234: **** 321
[M::ha_hist_line] 235: ****** 464
[M::ha_hist_line] 236: ****** 475
[M::ha_hist_line] 237: ****** 468
[M::ha_hist_line] 238: ***** 424
[M::ha_hist_line] 239: *** 259
[M::ha_hist_line] 240: *** 269
[M::ha_hist_line] 241: *** 227
[M::ha_hist_line] 242: ** 193
[M::ha_hist_line] 243: *** 226
[M::ha_hist_line] 244: *** 212
[M::ha_hist_line] 245: *** 205
[M::ha_hist_line] 246: ** 200
[M::ha_hist_line] 247: *** 215
[M::ha_hist_line] 248: ** 202
[M::ha_hist_line] 249: ** 191
[M::ha_hist_line] 250: *** 264
[M::ha_hist_line] 251: *** 278
[M::ha_hist_line] 252: ** 199
[M::ha_hist_line] 253: ** 162
[M::ha_hist_line] 254: ** 149
[M::ha_hist_line] 255: ** 151
[M::ha_hist_line] 256: * 119
[M::ha_hist_line] 257: * 119
[M::ha_hist_line] 258: * 107
[M::ha_hist_line] 259: ** 145
[M::ha_hist_line] 260: ** 164
[M::ha_hist_line] 261: * 70
[M::ha_hist_line] 262: * 100
[M::ha_hist_line] 263: ** 130
[M::ha_hist_line] 264: ** 136
[M::ha_hist_line] 265: ** 136
[M::ha_hist_line] 266: * 78
[M::ha_hist_line] 267: ** 135
[M::ha_hist_line] 268: * 106
[M::ha_hist_line] 269: * 72
[M::ha_hist_line] 270: * 78
[M::ha_hist_line] 271: * 90
[M::ha_hist_line] 272: ** 146
[M::ha_hist_line] 273: * 118
[M::ha_hist_line] 274: ** 190
[M::ha_hist_line] 275: ** 134
[M::ha_hist_line] 276: ** 131
[M::ha_hist_line] 277: *** 219
[M::ha_hist_line] 278: *** 262
[M::ha_hist_line] 279: ** 134
[M::ha_hist_line] 280: ** 187
[M::ha_hist_line] 281: ** 123
[M::ha_hist_line] 282: * 109
[M::ha_hist_line] 283: ** 145
[M::ha_hist_line] 284: ** 122
[M::ha_hist_line] 285: * 93
[M::ha_hist_line] 286: * 88
[M::ha_hist_line] 287: * 86
[M::ha_hist_line] 288: * 82
[M::ha_hist_line] 289: * 79
[M::ha_hist_line] 290: * 51
[M::ha_hist_line] 291: * 70
[M::ha_hist_line] 292: * 63
[M::ha_hist_line] 293: * 50
[M::ha_hist_line] 294: * 48
[M::ha_hist_line] rest: **************************************************************************************************** 8106
[M::ha_analyze_count] left: none
[M::ha_analyze_count] right: none
[M::ha_ft_gen] peak_hom: 50; peak_het: 7
[M::ha_ct_shrink::15.1481.70] ==> counted 2 distinct minimizer k-mers
[M::ha_ft_gen::15.161[email protected]] ==> filtered out 2 k-mers occurring 4094 or more times
[M::ha_opt_update_cov] updated max_n_chain to 50000
[M::yak_count] collected 2686566 minimizers
[M::ha_pt_gen::16.4501.90] ==> counted 90579 distinct minimizer k-mers
[M::ha_pt_gen] count[4095] = 0 (for sanity check)
[M::ha_analyze_count] lowest: count[8] = 207
[M::ha_analyze_count] highest: count[77] = 280
[M::ha_hist_line] 1: ****************************************************************************************************> 53355
[M::ha_hist_line] 2: ****************************************************************************************************> 4842
[M::ha_hist_line] 3: ****************************************************************************************************> 1201
[M::ha_hist_line] 4: ****************************************************************************************************> 625
[M::ha_hist_line] 5: ****************************************************************************************************> 397
[M::ha_hist_line] 6: ****************************************************************************************************> 343
[M::ha_hist_line] 7: ****************************************************************************************************> 330
[M::ha_hist_line] 8: ************************************************************************** 207
[M::ha_hist_line] 9: ******************************************************************************** 223
[M::ha_hist_line] 10: ***************************************************************************************** 250
[M::ha_hist_line] 11: ***************************************************************************** 215
[M::ha_hist_line] 12: ********************************************************************************* 227
[M::ha_hist_line] 13: **************************************************************************** 212
[M::ha_hist_line] 14: *************************************************************** 176
[M::ha_hist_line] 15: ************************************************************************* 205
[M::ha_hist_line] 16: ******************************************************************* 188
[M::ha_hist_line] 17: ********************************************** 130
[M::ha_hist_line] 18: ********************************************************************* 192
[M::ha_hist_line] 19: ******************************************************* 154
[M::ha_hist_line] 20: ****************************************************************** 185
[M::ha_hist_line] 21: ****************************************************************** 184
[M::ha_hist_line] 22: ************************************************** 140
[M::ha_hist_line] 23: ********************************************************** 162
[M::ha_hist_line] 24: **************************************************** 147
[M::ha_hist_line] 25: ************************************************ 135
[M::ha_hist_line] 26: **************************************************************** 180
[M::ha_hist_line] 27: ************************************************************** 173
[M::ha_hist_line] 28: *********************************************************************** 200
[M::ha_hist_line] 29: ******************************************************** 158
[M::ha_hist_line] 30: ****************************************************** 150
[M::ha_hist_line] 31: ************************************************************ 167
[M::ha_hist_line] 32: **************************************************************** 178
[M::ha_hist_line] 33: ************************************************************************** 207
[M::ha_hist_line] 34: ******************************************************************************* 220
[M::ha_hist_line] 35: ************************************************************************************************* 271
[M::ha_hist_line] 36: ************************************************************************************* 237
[M::ha_hist_line] 37: ******************************************************************************************** 257
[M::ha_hist_line] 38: **************************************************************************************** 246
[M::ha_hist_line] 39: ************************************************************************************************** 275
[M::ha_hist_line] 40: ***************************************************************************** 216
[M::ha_hist_line] 41: ***************************************************************************************** 250
[M::ha_hist_line] 42: *************************************************************************************************** 278
[M::ha_hist_line] 43: ************************************************************************************ 234
[M::ha_hist_line] 44: ********************************************************************************** 229
[M::ha_hist_line] 45: ************************************************************************************* 238
[M::ha_hist_line] 46: ************************************************************************************** 241
[M::ha_hist_line] 47: ********************************************************************************** 231
[M::ha_hist_line] 48: *********************************************************************************** 232
[M::ha_hist_line] 49: ***************************************************************************** 217
[M::ha_hist_line] 50: ******************************************************************************** 225
[M::ha_hist_line] 51: ************************************************************************************* 237
[M::ha_hist_line] 52: ******************************************************************************** 225
[M::ha_hist_line] 53: ********************************************************************************** 231
[M::ha_hist_line] 54: *************************************************************************** 210
[M::ha_hist_line] 55: ****************************************************************************** 219
[M::ha_hist_line] 56: ******************************************************************************** 224
[M::ha_hist_line] 57: ************************************************************************************** 240
[M::ha_hist_line] 58: ************************************************************************************* 238
[M::ha_hist_line] 59: ********************************************************************************* 228
[M::ha_hist_line] 60: ************************************************************************************** 241
[M::ha_hist_line] 61: ************************************************************************************* 239
[M::ha_hist_line] 62: **************************************************************************************** 246
[M::ha_hist_line] 63: *************************************************************************** 211
[M::ha_hist_line] 64: ************************************************************************************** 241
[M::ha_hist_line] 65: **************************************************************************** 212
[M::ha_hist_line] 66: **************************************************************************** 213
[M::ha_hist_line] 67: ******************************************************************************** 225
[M::ha_hist_line] 68: *************************************************************************************** 243
[M::ha_hist_line] 69: ********************************************************************************** 231
[M::ha_hist_line] 70: ************************************************************************************* 237
[M::ha_hist_line] 71: ***************************************************************************** 215
[M::ha_hist_line] 72: ********************************************************************************** 231
[M::ha_hist_line] 73: *********************************************************************************************** 267
[M::ha_hist_line] 74: ******************************************************************************************** 257
[M::ha_hist_line] 75: ************************************************************************************** 241
[M::ha_hist_line] 76: ********************************************************************************************** 264
[M::ha_hist_line] 77: **************************************************************************************************** 280
[M::ha_hist_line] 78: ***************************************************************************************** 250
[M::ha_hist_line] 79: ************************************************************************************ 235
[M::ha_hist_line] 80: **************************************************************************************** 247
[M::ha_hist_line] 81: ************************************************************************** 207
[M::ha_hist_line] 82: *********************************************************************** 199
[M::ha_hist_line] 83: ************************************************************************** 206
[M::ha_hist_line] 84: ***************************************************************** 181
[M::ha_hist_line] 85: ****************************************************************** 184
[M::ha_hist_line] 86: ********************************************************************** 196
[M::ha_hist_line] 87: *************************************************************************** 209
[M::ha_hist_line] 88: **************************************************************************** 212
[M::ha_hist_line] 89: ****************************************************************************************** 251
[M::ha_hist_line] 90: ****************************************************************************** 218
[M::ha_hist_line] 91: ***************************************************************************************** 249
[M::ha_hist_line] 92: ********************************************************************************** 231
[M::ha_hist_line] 93: **************************************************************************************** 246
[M::ha_hist_line] 94: ***************************************************************************** 216
[M::ha_hist_line] 95: ********************************************************************************* 227
[M::ha_hist_line] 96: ******************************************************************************* 221
[M::ha_hist_line] 97: ********************************************************************************* 226
[M::ha_hist_line] 98: ********************************************************************************* 226
[M::ha_hist_line] 99: ********************************************************************************* 226
[M::ha_hist_line] 100: ************************************************************************************ 234
[M::ha_hist_line] 101: ******************************************************************************* 221
[M::ha_hist_line] 102: ******************************************************************************* 221
[M::ha_hist_line] 103: ***************************************************************** 182
[M::ha_hist_line] 104: ******************************************************************************* 222
[M::ha_hist_line] 105: ************************************************************************** 207
[M::ha_hist_line] 106: ***************************************************************** 182
[M::ha_hist_line] 107: ***************************************************************************** 216
[M::ha_hist_line] 108: *************************************************************************************** 244
[M::ha_hist_line] 109: ********************************************************************* 194
[M::ha_hist_line] 110: ************************************************************************ 201
[M::ha_hist_line] 111: ************************************************************************* 204
[M::ha_hist_line] 112: ******************************************************* 153
[M::ha_hist_line] 113: *************************************************** 144
[M::ha_hist_line] 114: *********************************************************** 164
[M::ha_hist_line] 115: *********************************************************** 166
[M::ha_hist_line] 116: ****************************************************************** 184
[M::ha_hist_line] 117: ************************************************ 135
[M::ha_hist_line] 118: *********************************************** 131
[M::ha_hist_line] 119: **************************************************** 146
[M::ha_hist_line] 120: ****************************************************** 150
[M::ha_hist_line] 121: ************************************************* 138
[M::ha_hist_line] 122: ********************************************** 129
[M::ha_hist_line] 123: ********************************************** 129
[M::ha_hist_line] 124: *************************************************** 142
[M::ha_hist_line] 125: *********************************************** 133
[M::ha_hist_line] 126: ************************************************** 140
[M::ha_hist_line] 127: ******************************************** 123
[M::ha_hist_line] 128: ******************************************* 121
[M::ha_hist_line] 129: ***************************************** 116
[M::ha_hist_line] 130: ************************************** 107
[M::ha_hist_line] 131: ***************************************** 116
[M::ha_hist_line] 132: *********************************** 98
[M::ha_hist_line] 133: ************************************* 103
[M::ha_hist_line] 134: ********************************* 93
[M::ha_hist_line] 135: ************************************ 100
[M::ha_hist_line] 136: ********************************** 94
[M::ha_hist_line] 137: ******************************** 91
[M::ha_hist_line] 138: ************************************* 103
[M::ha_hist_line] 139: ********************************** 94
[M::ha_hist_line] 140: ************************** 73
[M::ha_hist_line] 141: ************************** 72
[M::ha_hist_line] 142: ************************ 68
[M::ha_hist_line] 143: ********************** 63
[M::ha_hist_line] 144: ******************* 54
[M::ha_hist_line] 145: ************************* 71
[M::ha_hist_line] 146: ******************** 57
[M::ha_hist_line] 147: ************************ 66
[M::ha_hist_line] 148: ******************* 54
[M::ha_hist_line] 149: ********************** 63
[M::ha_hist_line] 150: ******************* 54
[M::ha_hist_line] 151: ********************* 59
[M::ha_hist_line] 152: ************* 36
[M::ha_hist_line] 153: ******************* 52
[M::ha_hist_line] 154: **************** 45
[M::ha_hist_line] 155: ************** 39
[M::ha_hist_line] 156: *********** 30
[M::ha_hist_line] 157: ************ 34
[M::ha_hist_line] 158: *************** 43
[M::ha_hist_line] 159: *************** 42
[M::ha_hist_line] 160: ************** 38
[M::ha_hist_line] 161: ***************** 49
[M::ha_hist_line] 162: *********** 30
[M::ha_hist_line] 163: ************* 37
[M::ha_hist_line] 164: ***************** 49
[M::ha_hist_line] 165: *************** 42
[M::ha_hist_line] 166: ************** 38
[M::ha_hist_line] 167: *************** 43
[M::ha_hist_line] 168: ************* 37
[M::ha_hist_line] 169: ************* 37
[M::ha_hist_line] 170: **************** 46
[M::ha_hist_line] 171: ********** 27
[M::ha_hist_line] 172: *********** 30
[M::ha_hist_line] 173: ********** 29
[M::ha_hist_line] 174: ************* 36
[M::ha_hist_line] 175: *********** 31
[M::ha_hist_line] 176: ************ 33
[M::ha_hist_line] 177: ************* 37
[M::ha_hist_line] 178: ************* 36
[M::ha_hist_line] 179: ************* 37
[M::ha_hist_line] 180: ************ 34
[M::ha_hist_line] 181: *********** 30
[M::ha_hist_line] 182: ******** 22
[M::ha_hist_line] 183: ******* 20
[M::ha_hist_line] 184: ******* 20
[M::ha_hist_line] 185: ********* 24
[M::ha_hist_line] 186: ************ 34
[M::ha_hist_line] 187: ********** 27
[M::ha_hist_line] 188: ******* 21
[M::ha_hist_line] 189: ****** 18
[M::ha_hist_line] 190: *********** 30
[M::ha_hist_line] 191: ******** 23
[M::ha_hist_line] 192: ******** 22
[M::ha_hist_line] 193: ********* 24
[M::ha_hist_line] 194: ****** 17
[M::ha_hist_line] 195: ****** 18
[M::ha_hist_line] 196: ******* 19
[M::ha_hist_line] 197: ****** 16
[M::ha_hist_line] 198: ******* 20
[M::ha_hist_line] 199: ******* 19
[M::ha_hist_line] 200: **** 12
[M::ha_hist_line] 201: *** 8
[M::ha_hist_line] 202: **** 11
[M::ha_hist_line] 203: ********* 24
[M::ha_hist_line] 204: ******* 21
[M::ha_hist_line] 205: ****** 17
[M::ha_hist_line] 206: ******** 23
[M::ha_hist_line] 207: *** 8
[M::ha_hist_line] 208: **** 10
[M::ha_hist_line] 209: **** 11
[M::ha_hist_line] 210: *** 9
[M::ha_hist_line] 211: *** 8
[M::ha_hist_line] 212: ***** 13
[M::ha_hist_line] 213: ***** 14
[M::ha_hist_line] 214: **** 12
[M::ha_hist_line] 215: ******* 20
[M::ha_hist_line] 216: **** 12
[M::ha_hist_line] 217: ** 7
[M::ha_hist_line] 218: **** 12
[M::ha_hist_line] 219: ****** 16
[M::ha_hist_line] 220: ****** 18
[M::ha_hist_line] 221: **** 10
[M::ha_hist_line] 222: **** 11
[M::ha_hist_line] 223: **** 10
[M::ha_hist_line] 224: **** 10
[M::ha_hist_line] 225: ***** 14
[M::ha_hist_line] 226: ***** 14
[M::ha_hist_line] 227: **** 11
[M::ha_hist_line] 228: ***** 13
[M::ha_hist_line] 229: **** 12
[M::ha_hist_line] 230: ******* 19
[M::ha_hist_line] 231: ***** 14
[M::ha_hist_line] 232: ***** 14
[M::ha_hist_line] 233: ***** 14
[M::ha_hist_line] 234: ***** 14
[M::ha_hist_line] 235: ******* 20
[M::ha_hist_line] 236: ***** 14
[M::ha_hist_line] 237: *** 8
[M::ha_hist_line] 238: **** 12
[M::ha_hist_line] 239: ** 6
[M::ha_hist_line] 240: ** 5
[M::ha_hist_line] 241: ** 7
[M::ha_hist_line] 242: **** 10
[M::ha_hist_line] 243: *** 9
[M::ha_hist_line] 244: **** 11
[M::ha_hist_line] 245: * 3
[M::ha_hist_line] 246: *** 9
[M::ha_hist_line] 247: * 4
[M::ha_hist_line] 248: *** 9
[M::ha_hist_line] 249: ** 6
[M::ha_hist_line] 250: **** 12
[M::ha_hist_line] 251: ** 7
[M::ha_hist_line] 252: * 2
[M::ha_hist_line] 253: *** 8
[M::ha_hist_line] 254: * 4
[M::ha_hist_line] 255: ** 5
[M::ha_hist_line] 256: * 3
[M::ha_hist_line] 257: *** 9
[M::ha_hist_line] 258: * 4
[M::ha_hist_line] 259: * 3
[M::ha_hist_line] 260: * 4
[M::ha_hist_line] 261: * 4
[M::ha_hist_line] 262: * 4
[M::ha_hist_line] 263: * 2
[M::ha_hist_line] 264: ** 5
[M::ha_hist_line] 265: * 4
[M::ha_hist_line] 266: ** 7
[M::ha_hist_line] 267: * 3
[M::ha_hist_line] 268: * 3
[M::ha_hist_line] 269: ** 5
[M::ha_hist_line] 270: *** 8
[M::ha_hist_line] 271: ** 5
[M::ha_hist_line] 272: *** 9
[M::ha_hist_line] 273: ** 6
[M::ha_hist_line] 274: * 4
[M::ha_hist_line] 275: **** 11
[M::ha_hist_line] 276: ** 6
[M::ha_hist_line] 277: * 2
[M::ha_hist_line] 278: *** 8
[M::ha_hist_line] 279: * 4
[M::ha_hist_line] 280: * 3
[M::ha_hist_line] 281: *** 8
[M::ha_hist_line] 282: * 3
[M::ha_hist_line] 283: * 3
[M::ha_hist_line] 284: * 4
[M::ha_hist_line] 285: * 4
[M::ha_hist_line] 286: * 4
[M::ha_hist_line] 287: * 3
[M::ha_hist_line] rest: ************************************************************************************************> 297
[M::ha_analyze_count] left: count[42] = 278
[M::ha_analyze_count] right: count[89] = 251
[M::ha_pt_gen] peak_hom: 42; peak_het: -1
[M::ha_ct_shrink::16.4721.90] ==> counted 37224 distinct minimizer k-mers
[M::ha_pt_gen::] counting in normal mode
[M::yak_count] collected 2686566 minimizers
[M::ha_pt_gen::17.0392.11] ==> indexed 2633211 positions, counted 37224 distinct minimizer k-mers
[M::ha_assemble::52.851[email protected]] ==> corrected reads for round 1
[M::ha_assemble] # bases: 100999180; # corrected bases: 123207; # recorrected bases: 653
[M::ha_assemble] size of buffer: 1.157GB
[M::yak_count] collected 2686680 minimizers
[M::ha_pt_gen::53.34313.64] ==> counted 35618 distinct minimizer k-mers
[M::ha_pt_gen] count[4095] = 0 (for sanity check)
[M::ha_analyze_count] lowest: count[6] = 295
[M::ha_analyze_count] highest: count[7] = 308
[M::ha_hist_line] 1: ****************************************************************************************************> 3071
[M::ha_hist_line] 2: ****************************************************************************************************> 1048
[M::ha_hist_line] 3: ****************************************************************************************************> 680
[M::ha_hist_line] 4: ****************************************************************************************************> 431
[M::ha_hist_line] 5: ****************************************************************************************************> 337
[M::ha_hist_line] 6: ************************************************************************************************ 295
[M::ha_hist_line] 7: **************************************************************************************************** 308
[M::ha_hist_line] 8: ************************************************************** 192
[M::ha_hist_line] 9: ******************************************************************* 207
[M::ha_hist_line] 10: ************************************************************************ 223
[M::ha_hist_line] 11: ******************************************************************** 208
[M::ha_hist_line] 12: **************************************************************** 196
[M::ha_hist_line] 13: ******************************************************************************* 242
[M::ha_hist_line] 14: ************************************************* 152
[M::ha_hist_line] 15: ************************************************************************** 227
[M::ha_hist_line] 16: ************************************************************* 188
[M::ha_hist_line] 17: *********************************************** 144
[M::ha_hist_line] 18: ********************************************************* 177
[M::ha_hist_line] 19: ************************************************** 153
[M::ha_hist_line] 20: ***************************************************** 164
[M::ha_hist_line] 21: *********************************************************** 183
[M::ha_hist_line] 22: **************************************** 122
[M::ha_hist_line] 23: *********************************************** 146
[M::ha_hist_line] 24: ************************************************** 154
[M::ha_hist_line] 25: ************************************************** 154
[M::ha_hist_line] 26: ************************************************* 150
[M::ha_hist_line] 27: ****************************************************** 167
[M::ha_hist_line] 28: ********************************************************* 176
[M::ha_hist_line] 29: ******************************************************** 174
[M::ha_hist_line] 30: ********************************************** 143
[M::ha_hist_line] 31: **************************************************** 160
[M::ha_hist_line] 32: ******************************************************* 169
[M::ha_hist_line] 33: ********************************************************** 179
[M::ha_hist_line] 34: *************************************************************** 193
[M::ha_hist_line] 35: ********************************************************************************** 252
[M::ha_hist_line] 36: ************************************************************************* 224
[M::ha_hist_line] 37: ******************************************************************************* 243
[M::ha_hist_line] 38: ****************************************************************************************** 277
[M::ha_hist_line] 39: **************************************************************************** 234
[M::ha_hist_line] 40: ************************************************************************************** 266
[M::ha_hist_line] 41: ************************************************************** 192
[M::ha_hist_line] 42: ***************************************************************************************** 274
[M::ha_hist_line] 43: *************************************************************************** 232
[M::ha_hist_line] 44: ******************************************************************************** 246
[M::ha_hist_line] 45: ************************************************************************* 224
[M::ha_hist_line] 46: ******************************************************************* 205
[M::ha_hist_line] 47: ************************************************************************** 227
[M::ha_hist_line] 48: ********************************************************************** 215
[M::ha_hist_line] 49: ************************************************************************* 225
[M::ha_hist_line] 50: *********************************************************************** 220
[M::ha_hist_line] 51: ***************************************************************************** 238
[M::ha_hist_line] 52: ************************************************************************ 222
[M::ha_hist_line] 53: ********************************************************************************************* 286
[M::ha_hist_line] 54: ************************************************************* 189
[M::ha_hist_line] 55: *************************************************************************** 230
[M::ha_hist_line] 56: ********************************************************************** 217
[M::ha_hist_line] 57: ******************************************************************* 205
[M::ha_hist_line] 58: ************************************************************* 189
[M::ha_hist_line] 59: *************************************************************************** 230
[M::ha_hist_line] 60: ************************************************************************************** 264
[M::ha_hist_line] 61: ************************************************************************** 229
[M::ha_hist_line] 62: ********************************************************************** 215
[M::ha_hist_line] 63: *************************************************************************** 231
[M::ha_hist_line] 64: ******************************************************************************** 246
[M::ha_hist_line] 65: ************************************************************************ 223
[M::ha_hist_line] 66: ******************************************************************** 208
[M::ha_hist_line] 67: **************************************************************** 197
[M::ha_hist_line] 68: ************************************************************************* 224
[M::ha_hist_line] 69: ********************************************************************** 216
[M::ha_hist_line] 70: *********************************************************************** 219
[M::ha_hist_line] 71: *********************************************************************** 220
[M::ha_hist_line] 72: ************************************************************************ 222
[M::ha_hist_line] 73: ********************************************************************************* 250
[M::ha_hist_line] 74: ************************************************************************* 224
[M::ha_hist_line] 75: ******************************************************************************* 243
[M::ha_hist_line] 76: *********************************************************************************** 255
[M::ha_hist_line] 77: *************************************************************************************** 269
[M::ha_hist_line] 78: ********************************************************************************** 253
[M::ha_hist_line] 79: ********************************************************************************* 251
[M::ha_hist_line] 80: ********************************************************************************** 254
[M::ha_hist_line] 81: ***************************************************************************** 237
[M::ha_hist_line] 82: **************************************************************** 196
[M::ha_hist_line] 83: ************************************************************************ 221
[M::ha_hist_line] 84: ********************************************************************* 211
[M::ha_hist_line] 85: ***************************************************************** 199
[M::ha_hist_line] 86: ************************************************************* 187
[M::ha_hist_line] 87: **************************************************** 160
[M::ha_hist_line] 88: ******************************************************* 169
[M::ha_hist_line] 89: ********************************************************************* 212
[M::ha_hist_line] 90: ************************************************************************ 222
[M::ha_hist_line] 91: ***************************************************************** 201
[M::ha_hist_line] 92: ************************************************************************ 223
[M::ha_hist_line] 93: ********************************************************************************* 250
[M::ha_hist_line] 94: ************************************************************************** 227
[M::ha_hist_line] 95: *************************************************************************************** 269
[M::ha_hist_line] 96: ************************************************************************ 221
[M::ha_hist_line] 97: ********************************************************************************** 254
[M::ha_hist_line] 98: ************************************************************ 184
[M::ha_hist_line] 99: **************************************************************** 196
[M::ha_hist_line] 100: *************************************************************************** 232
[M::ha_hist_line] 101: *********************************************************************** 220
[M::ha_hist_line] 102: ***************************************************************** 199
[M::ha_hist_line] 103: *************************************************************************** 232
[M::ha_hist_line] 104: ************************************************************************* 225
[M::ha_hist_line] 105: ******************************************************************* 205
[M::ha_hist_line] 106: ****************************************************************** 202
[M::ha_hist_line] 107: ****************************************************************** 204
[M::ha_hist_line] 108: ************************************************************* 187
[M::ha_hist_line] 109: ******************************************************************* 205
[M::ha_hist_line] 110: ******************************************************************** 210
[M::ha_hist_line] 111: ********************************************************************************* 249
[M::ha_hist_line] 112: ******************************************************************** 210
[M::ha_hist_line] 113: ************************************************** 155
[M::ha_hist_line] 114: ********************************************** 142
[M::ha_hist_line] 115: *************************************************** 158
[M::ha_hist_line] 116: ************************************************************* 189
[M::ha_hist_line] 117: *************************************************** 157
[M::ha_hist_line] 118: ******************************************** 137
[M::ha_hist_line] 119: *************************************************** 157
[M::ha_hist_line] 120: ********************************************** 141
[M::ha_hist_line] 121: ***************************************************** 163
[M::ha_hist_line] 122: ************************************ 111
[M::ha_hist_line] 123: *************************************************** 158
[M::ha_hist_line] 124: ****************************************** 130
[M::ha_hist_line] 125: ************************************* 114
[M::ha_hist_line] 126: ************************************** 118
[M::ha_hist_line] 127: ************************************************** 155
[M::ha_hist_line] 128: ************************************************* 151
[M::ha_hist_line] 129: ***************************************************** 163
[M::ha_hist_line] 130: ****************************************** 128
[M::ha_hist_line] 131: ********************************* 103
[M::ha_hist_line] 132: *********************************** 109
[M::ha_hist_line] 133: ************************************ 110
[M::ha_hist_line] 134: *********************************** 107
[M::ha_hist_line] 135: ***************************** 89
[M::ha_hist_line] 136: ******************************* 96
[M::ha_hist_line] 137: ***************************** 90
[M::ha_hist_line] 138: ************************************ 110
[M::ha_hist_line] 139: *************************** 82
[M::ha_hist_line] 140: ********************************* 101
[M::ha_hist_line] 141: ********************************** 106
[M::ha_hist_line] 142: ******************************* 96
[M::ha_hist_line] 143: *********************** 71
[M::ha_hist_line] 144: ******************** 61
[M::ha_hist_line] 145: ************************ 74
[M::ha_hist_line] 146: ******************* 59
[M::ha_hist_line] 147: ********************** 67
[M::ha_hist_line] 148: ******************** 62
[M::ha_hist_line] 149: ******************* 58
[M::ha_hist_line] 150: ************************** 79
[M::ha_hist_line] 151: ******************* 60
[M::ha_hist_line] 152: ************** 43
[M::ha_hist_line] 153: **************** 50
[M::ha_hist_line] 154: ***************** 53
[M::ha_hist_line] 155: **************** 50
[M::ha_hist_line] 156: ************** 42
[M::ha_hist_line] 157: ************ 37
[M::ha_hist_line] 158: ************ 36
[M::ha_hist_line] 159: ************** 44
[M::ha_hist_line] 160: ************** 44
[M::ha_hist_line] 161: ************** 44
[M::ha_hist_line] 162: *************** 45
[M::ha_hist_line] 163: *********** 33
[M::ha_hist_line] 164: ************ 37
[M::ha_hist_line] 165: ********** 31
[M::ha_hist_line] 166: *********** 33
[M::ha_hist_line] 167: *************** 46
[M::ha_hist_line] 168: ***************** 53
[M::ha_hist_line] 169: *************** 46
[M::ha_hist_line] 170: *************** 46
[M::ha_hist_line] 171: *********** 35
[M::ha_hist_line] 172: ********** 32
[M::ha_hist_line] 173: *********** 33
[M::ha_hist_line] 174: ********** 30
[M::ha_hist_line] 175: ********* 29
[M::ha_hist_line] 176: ************ 38
[M::ha_hist_line] 177: ********* 29
[M::ha_hist_line] 178: *********** 34
[M::ha_hist_line] 179: ********** 30
[M::ha_hist_line] 180: *********** 35
[M::ha_hist_line] 181: *************** 46
[M::ha_hist_line] 182: ********** 31
[M::ha_hist_line] 183: *********** 34
[M::ha_hist_line] 184: ********* 27
[M::ha_hist_line] 185: ******* 23
[M::ha_hist_line] 186: ***** 14
[M::ha_hist_line] 187: ********** 30
[M::ha_hist_line] 188: ********* 28
[M::ha_hist_line] 189: ********** 31
[M::ha_hist_line] 190: ********** 30
[M::ha_hist_line] 191: ******* 23
[M::ha_hist_line] 192: ********* 28
[M::ha_hist_line] 193: ****** 20
[M::ha_hist_line] 194: ****** 18
[M::ha_hist_line] 195: ******** 24
[M::ha_hist_line] 196: ***** 14
[M::ha_hist_line] 197: ****** 18
[M::ha_hist_line] 198: ****** 17
[M::ha_hist_line] 199: ************ 36
[M::ha_hist_line] 200: **** 12
[M::ha_hist_line] 201: ***** 14
[M::ha_hist_line] 202: ***** 15
[M::ha_hist_line] 203: ***** 14
[M::ha_hist_line] 204: **** 12
[M::ha_hist_line] 205: ******* 22
[M::ha_hist_line] 206: ******* 23
[M::ha_hist_line] 207: ******* 21
[M::ha_hist_line] 208: **** 11
[M::ha_hist_line] 209: ******* 22
[M::ha_hist_line] 210: ***** 14
[M::ha_hist_line] 211: ****** 19
[M::ha_hist_line] 212: *** 8
[M::ha_hist_line] 213: *** 9
[M::ha_hist_line] 214: **** 11
[M::ha_hist_line] 215: *** 10
[M::ha_hist_line] 216: ***** 16
[M::ha_hist_line] 217: ***** 16
[M::ha_hist_line] 218: *** 8
[M::ha_hist_line] 219: ****** 17
[M::ha_hist_line] 220: *** 10
[M::ha_hist_line] 221: ***** 15
[M::ha_hist_line] 222: ****** 19
[M::ha_hist_line] 223: **** 12
[M::ha_hist_line] 224: **** 12
[M::ha_hist_line] 225: ** 5
[M::ha_hist_line] 226: ****** 17
[M::ha_hist_line] 227: **** 13
[M::ha_hist_line] 228: **** 11
[M::ha_hist_line] 229: ***** 15
[M::ha_hist_line] 230: ***** 14
[M::ha_hist_line] 231: ** 5
[M::ha_hist_line] 232: ***** 16
[M::ha_hist_line] 233: **** 11
[M::ha_hist_line] 234: *** 8
[M::ha_hist_line] 235: *** 9
[M::ha_hist_line] 236: ****** 20
[M::ha_hist_line] 237: **** 11
[M::ha_hist_line] 238: ***** 15
[M::ha_hist_line] 239: ***** 16
[M::ha_hist_line] 240: ****** 17
[M::ha_hist_line] 241: ***** 15
[M::ha_hist_line] 242: ** 6
[M::ha_hist_line] 243: ** 7
[M::ha_hist_line] 244: **** 12
[M::ha_hist_line] 245: ** 7
[M::ha_hist_line] 246: ** 6
[M::ha_hist_line] 247: *** 8
[M::ha_hist_line] 248: **** 12
[M::ha_hist_line] 249: *** 8
[M::ha_hist_line] 250: ** 6
[M::ha_hist_line] 251: *** 9
[M::ha_hist_line] 252: ** 7
[M::ha_hist_line] 253: **** 11
[M::ha_hist_line] 254: ** 5
[M::ha_hist_line] 255: ** 7
[M::ha_hist_line] 256: * 3
[M::ha_hist_line] 257: ** 6
[M::ha_hist_line] 258: ** 6
[M::ha_hist_line] 259: * 3
[M::ha_hist_line] 260: ** 5
[M::ha_hist_line] 261: * 2
[M::ha_hist_line] 262: * 3
[M::ha_hist_line] 263: * 2
[M::ha_hist_line] 264: * 3
[M::ha_hist_line] 265: * 2
[M::ha_hist_line] 266: * 3
[M::ha_hist_line] 267: * 3
[M::ha_hist_line] 268: ** 7
[M::ha_hist_line] 269: ** 6
[M::ha_hist_line] 270: ** 5
[M::ha_hist_line] 271: ** 6
[M::ha_hist_line] 272: ** 5
[M::ha_hist_line] 273: * 2
[M::ha_hist_line] 274: * 3
[M::ha_hist_line] 275: ** 5
[M::ha_hist_line] 276: ** 6
[M::ha_hist_line] 277: *** 9
[M::ha_hist_line] 278: *** 9
[M::ha_hist_line] 279: ** 7
[M::ha_hist_line] 280: ** 7
[M::ha_hist_line] 281: ** 6
[M::ha_hist_line] 282: *** 9
[M::ha_hist_line] 283: *** 9
[M::ha_hist_line] 284: ** 7
[M::ha_hist_line] 285: ** 5
[M::ha_hist_line] 286: ** 5
[M::ha_hist_line] rest: ************************************************************************************************> 314
[M::ha_analyze_count] left: none
[M::ha_analyze_count] right: none
[M::ha_pt_gen] peak_hom: 50; peak_het: 7
[M::ha_ct_shrink::53.36513.64] ==> counted 32547 distinct minimizer k-mers
[M::ha_pt_gen::] counting in normal mode
[M::yak_count] collected 2686680 minimizers
[M::ha_pt_gen::53.81013.61] ==> indexed 2683609 positions, counted 32547 distinct minimizer k-mers
[M::ha_assemble::83.464[email protected]] ==> corrected reads for round 2
[M::ha_assemble] # bases: 101006457; # corrected bases: 7201; # recorrected bases: 184
[M::ha_assemble] size of buffer: 0.958GB
[M::yak_count] collected 2686842 minimizers
[M::ha_pt_gen::83.92516.01] ==> counted 34642 distinct minimizer k-mers
[M::ha_pt_gen] count[4095] = 0 (for sanity check)
[M::ha_analyze_count] lowest: count[6] = 298
[M::ha_analyze_count] highest: count[7] = 304
[M::ha_hist_line] 1: ****************************************************************************************************> 2323
[M::ha_hist_line] 2: ****************************************************************************************************> 858
[M::ha_hist_line] 3: ****************************************************************************************************> 659
[M::ha_hist_line] 4: ****************************************************************************************************> 432
[M::ha_hist_line] 5: ****************************************************************************************************> 327
[M::ha_hist_line] 6: ************************************************************************************************** 298
[M::ha_hist_line] 7: **************************************************************************************************** 304
[M::ha_hist_line] 8: ***************************************************************** 198
[M::ha_hist_line] 9: ******************************************************************** 206
[M::ha_hist_line] 10: ************************************************************************* 223
[M::ha_hist_line] 11: ******************************************************************** 206
[M::ha_hist_line] 12: **************************************************************** 195
[M::ha_hist_line] 13: ****************************************************************************** 238
[M::ha_hist_line] 14: *************************************************** 156
[M::ha_hist_line] 15: ************************************************************************* 221
[M::ha_hist_line] 16: ************************************************************** 189
[M::ha_hist_line] 17: *********************************************** 143
[M::ha_hist_line] 18: *********************************************************** 180
[M::ha_hist_line] 19: ************************************************* 150
[M::ha_hist_line] 20: ****************************************************** 165
[M::ha_hist_line] 21: *********************************************************** 180
[M::ha_hist_line] 22: ****************************************** 127
[M::ha_hist_line] 23: ********************************************** 140
[M::ha_hist_line] 24: *************************************************** 155
[M::ha_hist_line] 25: **************************************************** 157
[M::ha_hist_line] 26: ************************************************ 147
[M::ha_hist_line] 27: ******************************************************** 171
[M::ha_hist_line] 28: ****************************************************** 163
[M::ha_hist_line] 29: ************************************************************ 181
[M::ha_hist_line] 30: ************************************************ 146
[M::ha_hist_line] 31: ***************************************************** 161
[M::ha_hist_line] 32: ****************************************************** 164
[M::ha_hist_line] 33: *********************************************************** 178
[M::ha_hist_line] 34: **************************************************************** 196
[M::ha_hist_line] 35: ****************************************************************************** 236
[M::ha_hist_line] 36: ******************************************************************************* 241
[M::ha_hist_line] 37: ******************************************************************************** 244
[M::ha_hist_line] 38: ***************************************************************************************** 272
[M::ha_hist_line] 39: ****************************************************************************** 237
[M::ha_hist_line] 40: ************************************************************************************** 262
[M::ha_hist_line] 41: *************************************************************** 191
[M::ha_hist_line] 42: ****************************************************************************************** 275
[M::ha_hist_line] 43: **************************************************************************** 230
[M::ha_hist_line] 44: ********************************************************************************* 245
[M::ha_hist_line] 45: *************************************************************************** 228
[M::ha_hist_line] 46: ******************************************************************** 208
[M::ha_hist_line] 47: ************************************************************************** 225
[M::ha_hist_line] 48: ********************************************************************** 213
[M::ha_hist_line] 49: ************************************************************************** 225
[M::ha_hist_line] 50: ************************************************************************ 219
[M::ha_hist_line] 51: ******************************************************************************* 240
[M::ha_hist_line] 52: ************************************************************************ 219
[M::ha_hist_line] 53: ******************************************************************************************* 277
[M::ha_hist_line] 54: ***************************************************************** 198
[M::ha_hist_line] 55: **************************************************************************** 232
[M::ha_hist_line] 56: ********************************************************************** 214
[M::ha_hist_line] 57: ****************************************************************** 200
[M::ha_hist_line] 58: ************************************************************** 190
[M::ha_hist_line] 59: **************************************************************************** 232
[M::ha_hist_line] 60: ************************************************************************************** 261
[M::ha_hist_line] 61: **************************************************************************** 232
[M::ha_hist_line] 62: *********************************************************************** 217
[M::ha_hist_line] 63: *************************************************************************** 227
[M::ha_hist_line] 64: ********************************************************************************* 246
[M::ha_hist_line] 65: ************************************************************************** 226
[M::ha_hist_line] 66: ********************************************************************* 209
[M::ha_hist_line] 67: **************************************************************** 196
[M::ha_hist_line] 68: ************************************************************************* 223
[M::ha_hist_line] 69: ********************************************************************** 214
[M::ha_hist_line] 70: ********************************************************************** 213
[M::ha_hist_line] 71: *************************************************************************** 227
[M::ha_hist_line] 72: ************************************************************************** 226
[M::ha_hist_line] 73: ********************************************************************************** 250
[M::ha_hist_line] 74: ********************************************************************** 213
[M::ha_hist_line] 75: ********************************************************************************* 247
[M::ha_hist_line] 76: ************************************************************************************ 255
[M::ha_hist_line] 77: *************************************************************************************** 266
[M::ha_hist_line] 78: ************************************************************************************ 256
[M::ha_hist_line] 79: ********************************************************************************** 248
[M::ha_hist_line] 80: ************************************************************************************ 255
[M::ha_hist_line] 81: ******************************************************************************* 240
[M::ha_hist_line] 82: *************************************************************** 193
[M::ha_hist_line] 83: *************************************************************************** 228
[M::ha_hist_line] 84: ******************************************************************** 206
[M::ha_hist_line] 85: *************************************************************** 193
[M::ha_hist_line] 86: ************************************************************** 188
[M::ha_hist_line] 87: ******************************************************* 167
[M::ha_hist_line] 88: ******************************************************* 168
[M::ha_hist_line] 89: ******************************************************************* 205
[M::ha_hist_line] 90: **************************************************************************** 231
[M::ha_hist_line] 91: ******************************************************************* 203
[M::ha_hist_line] 92: ************************************************************************* 221
[M::ha_hist_line] 93: ********************************************************************************** 249
[M::ha_hist_line] 94: ************************************************************************ 220
[M::ha_hist_line] 95: ***************************************************************************************** 271
[M::ha_hist_line] 96: ************************************************************************** 225
[M::ha_hist_line] 97: ************************************************************************************ 254
[M::ha_hist_line] 98: ************************************************************ 183
[M::ha_hist_line] 99: **************************************************************** 194
[M::ha_hist_line] 100: **************************************************************************** 231
[M::ha_hist_line] 101: ************************************************************************* 221
[M::ha_hist_line] 102: ****************************************************************** 202
[M::ha_hist_line] 103: **************************************************************************** 232
[M::ha_hist_line] 104: *********************************************************************** 217
[M::ha_hist_line] 105: ********************************************************************* 211
[M::ha_hist_line] 106: ******************************************************************* 203
[M::ha_hist_line] 107: ******************************************************************** 207
[M::ha_hist_line] 108: ************************************************************* 184
[M::ha_hist_line] 109: ******************************************************************** 208
[M::ha_hist_line] 110: ********************************************************************* 209
[M::ha_hist_line] 111: ********************************************************************************** 250
[M::ha_hist_line] 112: ******************************************************************** 208
[M::ha_hist_line] 113: **************************************************** 157
[M::ha_hist_line] 114: ********************************************* 137
[M::ha_hist_line] 115: *************************************************** 155
[M::ha_hist_line] 116: *************************************************************** 191
[M::ha_hist_line] 117: ***************************************************** 160
[M::ha_hist_line] 118: ********************************************* 138
[M::ha_hist_line] 119: **************************************************** 157
[M::ha_hist_line] 120: ******************************************* 131
[M::ha_hist_line] 121: ******************************************************* 167
[M::ha_hist_line] 122: ************************************* 112
[M::ha_hist_line] 123: **************************************************** 157
[M::ha_hist_line] 124: ******************************************** 135
[M::ha_hist_line] 125: *************************************** 119
[M::ha_hist_line] 126: ************************************** 115
[M::ha_hist_line] 127: ************************************************** 151
[M::ha_hist_line] 128: ************************************************** 153
[M::ha_hist_line] 129: ******************************************************* 167
[M::ha_hist_line] 130: ******************************************* 132
[M::ha_hist_line] 131: ********************************* 101
[M::ha_hist_line] 132: ************************************ 108
[M::ha_hist_line] 133: ************************************* 114
[M::ha_hist_line] 134: ************************************ 108
[M::ha_hist_line] 135: ****************************** 91
[M::ha_hist_line] 136: ****************************** 92
[M::ha_hist_line] 137: ******************************* 93
[M::ha_hist_line] 138: ********************************** 104
[M::ha_hist_line] 139: ***************************** 88
[M::ha_hist_line] 140: ********************************** 103
[M::ha_hist_line] 141: *********************************** 105
[M::ha_hist_line] 142: ******************************* 93
[M::ha_hist_line] 143: ************************ 73
[M::ha_hist_line] 144: ******************** 61
[M::ha_hist_line] 145: ************************ 73
[M::ha_hist_line] 146: ******************* 58
[M::ha_hist_line] 147: ********************** 67
[M::ha_hist_line] 148: ******************** 62
[M::ha_hist_line] 149: ****************** 55
[M::ha_hist_line] 150: ************************** 80
[M::ha_hist_line] 151: ******************* 58
[M::ha_hist_line] 152: **************** 48
[M::ha_hist_line] 153: **************** 49
[M::ha_hist_line] 154: ***************** 53
[M::ha_hist_line] 155: **************** 50
[M::ha_hist_line] 156: ************* 41
[M::ha_hist_line] 157: ************* 39
[M::ha_hist_line] 158: ************ 36
[M::ha_hist_line] 159: ************** 44
[M::ha_hist_line] 160: *************** 45
[M::ha_hist_line] 161: *************** 45
[M::ha_hist_line] 162: *************** 45
[M::ha_hist_line] 163: *********** 33
[M::ha_hist_line] 164: ************ 38
[M::ha_hist_line] 165: ********** 31
[M::ha_hist_line] 166: *********** 33
[M::ha_hist_line] 167: *************** 46
[M::ha_hist_line] 168: ***************** 52
[M::ha_hist_line] 169: ************** 42
[M::ha_hist_line] 170: *************** 45
[M::ha_hist_line] 171: ************ 36
[M::ha_hist_line] 172: ************ 35
[M::ha_hist_line] 173: *********** 34
[M::ha_hist_line] 174: ********* 26
[M::ha_hist_line] 175: ********* 28
[M::ha_hist_line] 176: ************** 42
[M::ha_hist_line] 177: ********** 29
[M::ha_hist_line] 178: *********** 34
[M::ha_hist_line] 179: ********** 29
[M::ha_hist_line] 180: ************ 35
[M::ha_hist_line] 181: **************** 48
[M::ha_hist_line] 182: *********** 32
[M::ha_hist_line] 183: *********** 32
[M::ha_hist_line] 184: ********* 27
[M::ha_hist_line] 185: ******** 23
[M::ha_hist_line] 186: ***** 15
[M::ha_hist_line] 187: ********* 28
[M::ha_hist_line] 188: ********** 29
[M::ha_hist_line] 189: *********** 32
[M::ha_hist_line] 190: ********* 28
[M::ha_hist_line] 191: ******** 25
[M::ha_hist_line] 192: ********* 26
[M::ha_hist_line] 193: ****** 18
[M::ha_hist_line] 194: ******** 23
[M::ha_hist_line] 195: ******* 20
[M::ha_hist_line] 196: ***** 14
[M::ha_hist_line] 197: ****** 19
[M::ha_hist_line] 198: ***** 16
[M::ha_hist_line] 199: ************* 40
[M::ha_hist_line] 200: **** 12
[M::ha_hist_line] 201: **** 13
[M::ha_hist_line] 202: ***** 16
[M::ha_hist_line] 203: ***** 14
[M::ha_hist_line] 204: **** 13
[M::ha_hist_line] 205: ******* 21
[M::ha_hist_line] 206: ******** 23
[M::ha_hist_line] 207: ******* 21
[M::ha_hist_line] 208: **** 12
[M::ha_hist_line] 209: ******** 23
[M::ha_hist_line] 210: **** 13
[M::ha_hist_line] 211: ****** 19
[M::ha_hist_line] 212: *** 9
[M::ha_hist_line] 213: ** 7
[M::ha_hist_line] 214: **** 12
[M::ha_hist_line] 215: *** 9
[M::ha_hist_line] 216: ***** 15
[M::ha_hist_line] 217: ***** 15
[M::ha_hist_line] 218: ** 7
[M::ha_hist_line] 219: ****** 17
[M::ha_hist_line] 220: **** 12
[M::ha_hist_line] 221: ***** 16
[M::ha_hist_line] 222: ****** 19
[M::ha_hist_line] 223: **** 12
[M::ha_hist_line] 224: **** 11
[M::ha_hist_line] 225: ** 5
[M::ha_hist_line] 226: ***** 14
[M::ha_hist_line] 227: ***** 15
[M::ha_hist_line] 228: *** 9
[M::ha_hist_line] 229: ****** 18
[M::ha_hist_line] 230: ***** 14
[M::ha_hist_line] 231: ** 5
[M::ha_hist_line] 232: **** 13
[M::ha_hist_line] 233: **** 11
[M::ha_hist_line] 234: **** 12
[M::ha_hist_line] 235: *** 9
[M::ha_hist_line] 236: ******* 20
[M::ha_hist_line] 237: **** 11
[M::ha_hist_line] 238: ***** 14
[M::ha_hist_line] 239: ****** 17
[M::ha_hist_line] 240: ****** 17
[M::ha_hist_line] 241: ***** 14
[M::ha_hist_line] 242: ** 5
[M::ha_hist_line] 243: *** 8
[M::ha_hist_line] 244: **** 13
[M::ha_hist_line] 245: ** 7
[M::ha_hist_line] 246: ** 6
[M::ha_hist_line] 247: ** 7
[M::ha_hist_line] 248: **** 11
[M::ha_hist_line] 249: *** 8
[M::ha_hist_line] 250: ** 5
[M::ha_hist_line] 251: **** 11
[M::ha_hist_line] 252: *** 8
[M::ha_hist_line] 253: **** 11
[M::ha_hist_line] 254: * 4
[M::ha_hist_line] 255: ** 6
[M::ha_hist_line] 256: * 4
[M::ha_hist_line] 257: ** 6
[M::ha_hist_line] 258: ** 7
[M::ha_hist_line] 259: * 3
[M::ha_hist_line] 260: ** 5
[M::ha_hist_line] 261: * 2
[M::ha_hist_line] 262: * 3
[M::ha_hist_line] 263: * 2
[M::ha_hist_line] 264: * 3
[M::ha_hist_line] 265: * 2
[M::ha_hist_line] 266: * 3
[M::ha_hist_line] 267: * 3
[M::ha_hist_line] 268: ** 7
[M::ha_hist_line] 269: ** 6
[M::ha_hist_line] 270: * 4
[M::ha_hist_line] 271: ** 6
[M::ha_hist_line] 272: ** 6
[M::ha_hist_line] 273: * 2
[M::ha_hist_line] 274: * 3
[M::ha_hist_line] 275: ** 6
[M::ha_hist_line] 276: * 4
[M::ha_hist_line] 277: *** 8
[M::ha_hist_line] 278: *** 9
[M::ha_hist_line] 279: ** 6
[M::ha_hist_line] 280: *** 8
[M::ha_hist_line] 281: *** 8
[M::ha_hist_line] 282: *** 9
[M::ha_hist_line] 283: *** 9
[M::ha_hist_line] 284: * 3
[M::ha_hist_line] 285: *** 8
[M::ha_hist_line] 286: ** 5
[M::ha_hist_line] rest: ************************************************************************************************> 315
[M::ha_analyze_count] left: none
[M::ha_analyze_count] right: none
[M::ha_pt_gen] peak_hom: 50; peak_het: 7
[M::ha_ct_shrink::83.94416.01] ==> counted 32319 distinct minimizer k-mers
[M::ha_pt_gen::] counting in normal mode
[M::yak_count] collected 2686842 minimizers
[M::ha_pt_gen::84.46815.96] ==> indexed 2684519 positions, counted 32319 distinct minimizer k-mers
[M::ha_assemble::115.968[email protected]] ==> corrected reads for round 3
[M::ha_assemble] # bases: 101009728; # corrected bases: 1129; # recorrected bases: 83
[M::ha_assemble] size of buffer: 0.941GB
[M::yak_count] collected 2686889 minimizers
[M::ha_pt_gen::116.37916.84] ==> counted 34554 distinct minimizer k-mers
[M::ha_pt_gen] count[4095] = 0 (for sanity check)
[M::ha_analyze_count] lowest: count[6] = 298
[M::ha_analyze_count] highest: count[7] = 304
[M::ha_hist_line] 1: ****************************************************************************************************> 2266
[M::ha_hist_line] 2: ****************************************************************************************************> 836
[M::ha_hist_line] 3: ****************************************************************************************************> 657
[M::ha_hist_line] 4: ****************************************************************************************************> 428
[M::ha_hist_line] 5: ****************************************************************************************************> 329
[M::ha_hist_line] 6: ************************************************************************************************** 298
[M::ha_hist_line] 7: **************************************************************************************************** 304
[M::ha_hist_line] 8: ***************************************************************** 197
[M::ha_hist_line] 9: ******************************************************************* 205
[M::ha_hist_line] 10: ************************************************************************* 222
[M::ha_hist_line] 11: ******************************************************************** 206
[M::ha_hist_line] 12: **************************************************************** 194
[M::ha_hist_line] 13: ****************************************************************************** 237
[M::ha_hist_line] 14: *************************************************** 156
[M::ha_hist_line] 15: ************************************************************************* 221
[M::ha_hist_line] 16: ************************************************************** 189
[M::ha_hist_line] 17: *********************************************** 143
[M::ha_hist_line] 18: *********************************************************** 179
[M::ha_hist_line] 19: ************************************************** 151
[M::ha_hist_line] 20: ****************************************************** 165
[M::ha_hist_line] 21: *********************************************************** 180
[M::ha_hist_line] 22: ****************************************** 127
[M::ha_hist_line] 23: ********************************************** 140
[M::ha_hist_line] 24: *************************************************** 155
[M::ha_hist_line] 25: **************************************************** 157
[M::ha_hist_line] 26: ************************************************ 147
[M::ha_hist_line] 27: ******************************************************** 171
[M::ha_hist_line] 28: ****************************************************** 163
[M::ha_hist_line] 29: ************************************************************ 181
[M::ha_hist_line] 30: ************************************************ 146
[M::ha_hist_line] 31: ***************************************************** 161
[M::ha_hist_line] 32: ****************************************************** 164
[M::ha_hist_line] 33: *********************************************************** 178
[M::ha_hist_line] 34: *************************************************************** 193
[M::ha_hist_line] 35: ******************************************************************************** 242
[M::ha_hist_line] 36: ****************************************************************************** 238
[M::ha_hist_line] 37: ******************************************************************************** 243
[M::ha_hist_line] 38: ****************************************************************************************** 273
[M::ha_hist_line] 39: ****************************************************************************** 236
[M::ha_hist_line] 40: ************************************************************************************** 262
[M::ha_hist_line] 41: *************************************************************** 192
[M::ha_hist_line] 42: ******************************************************************************************* 276
[M::ha_hist_line] 43: *************************************************************************** 229
[M::ha_hist_line] 44: ********************************************************************************* 245
[M::ha_hist_line] 45: *************************************************************************** 228
[M::ha_hist_line] 46: ********************************************************************* 209
[M::ha_hist_line] 47: ************************************************************************** 224
[M::ha_hist_line] 48: ********************************************************************** 213
[M::ha_hist_line] 49: ************************************************************************** 225
[M::ha_hist_line] 50: ************************************************************************ 219
[M::ha_hist_line] 51: ******************************************************************************* 240
[M::ha_hist_line] 52: ************************************************************************ 220
[M::ha_hist_line] 53: ******************************************************************************************* 276
[M::ha_hist_line] 54: ***************************************************************** 198
[M::ha_hist_line] 55: ***************************************************************************** 233
[M::ha_hist_line] 56: ********************************************************************** 213
[M::ha_hist_line] 57: ***************************************************************** 197
[M::ha_hist_line] 58: *************************************************************** 193
[M::ha_hist_line] 59: **************************************************************************** 230
[M::ha_hist_line] 60: ************************************************************************************** 261
[M::ha_hist_line] 61: **************************************************************************** 231
[M::ha_hist_line] 62: ************************************************************************ 219
[M::ha_hist_line] 63: *************************************************************************** 227
[M::ha_hist_line] 64: ******************************************************************************** 244
[M::ha_hist_line] 65: ************************************************************************** 226
[M::ha_hist_line] 66: ********************************************************************* 210
[M::ha_hist_line] 67: **************************************************************** 196
[M::ha_hist_line] 68: ************************************************************************* 223
[M::ha_hist_line] 69: ********************************************************************** 214
[M::ha_hist_line] 70: ********************************************************************** 213
[M::ha_hist_line] 71: *************************************************************************** 228
[M::ha_hist_line] 72: *************************************************************************** 227
[M::ha_hist_line] 73: ********************************************************************************** 250
[M::ha_hist_line] 74: ********************************************************************** 213
[M::ha_hist_line] 75: ********************************************************************************* 247
[M::ha_hist_line] 76: *********************************************************************************** 252
[M::ha_hist_line] 77: **************************************************************************************** 269
[M::ha_hist_line] 78: ************************************************************************************ 256
[M::ha_hist_line] 79: ********************************************************************************* 247
[M::ha_hist_line] 80: ************************************************************************************ 254
[M::ha_hist_line] 81: ****************************************************************************** 236
[M::ha_hist_line] 82: **************************************************************** 195
[M::ha_hist_line] 83: **************************************************************************** 231
[M::ha_hist_line] 84: ******************************************************************** 206
[M::ha_hist_line] 85: **************************************************************** 194
[M::ha_hist_line] 86: ************************************************************** 187
[M::ha_hist_line] 87: ******************************************************* 166
[M::ha_hist_line] 88: ******************************************************* 167
[M::ha_hist_line] 89: ******************************************************************** 206
[M::ha_hist_line] 90: **************************************************************************** 231
[M::ha_hist_line] 91: ******************************************************************* 203
[M::ha_hist_line] 92: ************************************************************************ 220
[M::ha_hist_line] 93: ********************************************************************************* 247
[M::ha_hist_line] 94: ************************************************************************* 222
[M::ha_hist_line] 95: ***************************************************************************************** 270
[M::ha_hist_line] 96: ************************************************************************** 224
[M::ha_hist_line] 97: *********************************************************************************** 252
[M::ha_hist_line] 98: ************************************************************* 184
[M::ha_hist_line] 99: *************************************************************** 193
[M::ha_hist_line] 100: **************************************************************************** 231
[M::ha_hist_line] 101: ************************************************************************ 219
[M::ha_hist_line] 102: ******************************************************************* 204
[M::ha_hist_line] 103: **************************************************************************** 232
[M::ha_hist_line] 104: ************************************************************************ 218
[M::ha_hist_line] 105: ********************************************************************* 210
[M::ha_hist_line] 106: ******************************************************************** 207
[M::ha_hist_line] 107: ********************************************************************* 211
[M::ha_hist_line] 108: ************************************************************ 181
[M::ha_hist_line] 109: ******************************************************************** 208
[M::ha_hist_line] 110: ********************************************************************* 211
[M::ha_hist_line] 111: ********************************************************************************** 249
[M::ha_hist_line] 112: ********************************************************************* 210
[M::ha_hist_line] 113: **************************************************** 157
[M::ha_hist_line] 114: ********************************************* 137
[M::ha_hist_line] 115: *************************************************** 154
[M::ha_hist_line] 116: *************************************************************** 191
[M::ha_hist_line] 117: ***************************************************** 161
[M::ha_hist_line] 118: ********************************************* 137
[M::ha_hist_line] 119: *************************************************** 156
[M::ha_hist_line] 120: ******************************************** 134
[M::ha_hist_line] 121: ****************************************************** 165
[M::ha_hist_line] 122: ************************************ 110
[M::ha_hist_line] 123: **************************************************** 158
[M::ha_hist_line] 124: ******************************************** 133
[M::ha_hist_line] 125: *************************************** 118
[M::ha_hist_line] 126: ************************************* 113
[M::ha_hist_line] 127: ************************************************* 149
[M::ha_hist_line] 128: **************************************************** 159
[M::ha_hist_line] 129: ******************************************************** 169
[M::ha_hist_line] 130: ******************************************* 132
[M::ha_hist_line] 131: ********************************* 101
[M::ha_hist_line] 132: ************************************ 108
[M::ha_hist_line] 133: ************************************* 114
[M::ha_hist_line] 134: *********************************** 107
[M::ha_hist_line] 135: ****************************** 92
[M::ha_hist_line] 136: ****************************** 91
[M::ha_hist_line] 137: ******************************* 93
[M::ha_hist_line] 138: *********************************** 105
[M::ha_hist_line] 139: ***************************** 87
[M::ha_hist_line] 140: ********************************** 104
[M::ha_hist_line] 141: ********************************** 103
[M::ha_hist_line] 142: ******************************* 95
[M::ha_hist_line] 143: ************************ 73
[M::ha_hist_line] 144: ******************** 61
[M::ha_hist_line] 145: ************************ 73
[M::ha_hist_line] 146: ******************* 58
[M::ha_hist_line] 147: ********************** 67
[M::ha_hist_line] 148: ******************** 62
[M::ha_hist_line] 149: ****************** 55
[M::ha_hist_line] 150: ************************** 80
[M::ha_hist_line] 151: ******************* 58
[M::ha_hist_line] 152: *************** 47
[M::ha_hist_line] 153: **************** 49
[M::ha_hist_line] 154: ***************** 51
[M::ha_hist_line] 155: ***************** 51
[M::ha_hist_line] 156: ************** 42
[M::ha_hist_line] 157: ************* 39
[M::ha_hist_line] 158: ************ 35
[M::ha_hist_line] 159: ************** 44
[M::ha_hist_line] 160: *************** 45
[M::ha_hist_line] 161: *************** 45
[M::ha_hist_line] 162: *************** 47
[M::ha_hist_line] 163: *********** 33
[M::ha_hist_line] 164: ************ 37
[M::ha_hist_line] 165: *********** 32
[M::ha_hist_line] 166: *********** 33
[M::ha_hist_line] 167: *************** 46
[M::ha_hist_line] 168: ***************** 52
[M::ha_hist_line] 169: ************** 42
[M::ha_hist_line] 170: *************** 45
[M::ha_hist_line] 171: ************ 35
[M::ha_hist_line] 172: ************ 36
[M::ha_hist_line] 173: *********** 34
[M::ha_hist_line] 174: ********* 26
[M::ha_hist_line] 175: ********* 28
[M::ha_hist_line] 176: ************** 42
[M::ha_hist_line] 177: ********** 29
[M::ha_hist_line] 178: *********** 34
[M::ha_hist_line] 179: ********** 29
[M::ha_hist_line] 180: ************ 35
[M::ha_hist_line] 181: **************** 48
[M::ha_hist_line] 182: *********** 32
[M::ha_hist_line] 183: *********** 32
[M::ha_hist_line] 184: ******** 25
[M::ha_hist_line] 185: ******** 25
[M::ha_hist_line] 186: ***** 15
[M::ha_hist_line] 187: ********* 28
[M::ha_hist_line] 188: ********** 29
[M::ha_hist_line] 189: *********** 32
[M::ha_hist_line] 190: ********* 28
[M::ha_hist_line] 191: ******** 25
[M::ha_hist_line] 192: ********* 26
[M::ha_hist_line] 193: ****** 18
[M::ha_hist_line] 194: ******** 23
[M::ha_hist_line] 195: ******* 20
[M::ha_hist_line] 196: ***** 14
[M::ha_hist_line] 197: ****** 19
[M::ha_hist_line] 198: ***** 16
[M::ha_hist_line] 199: ************* 40
[M::ha_hist_line] 200: **** 12
[M::ha_hist_line] 201: **** 13
[M::ha_hist_line] 202: ****** 18
[M::ha_hist_line] 203: ***** 14
[M::ha_hist_line] 204: **** 11
[M::ha_hist_line] 205: ******* 21
[M::ha_hist_line] 206: ******** 23
[M::ha_hist_line] 207: ******* 21
[M::ha_hist_line] 208: **** 12
[M::ha_hist_line] 209: ******** 23
[M::ha_hist_line] 210: **** 13
[M::ha_hist_line] 211: ****** 19
[M::ha_hist_line] 212: *** 9
[M::ha_hist_line] 213: ** 7
[M::ha_hist_line] 214: **** 12
[M::ha_hist_line] 215: *** 9
[M::ha_hist_line] 216: ***** 15
[M::ha_hist_line] 217: ***** 15
[M::ha_hist_line] 218: ** 7
[M::ha_hist_line] 219: ****** 17
[M::ha_hist_line] 220: **** 13
[M::ha_hist_line] 221: ***** 15
[M::ha_hist_line] 222: ****** 19
[M::ha_hist_line] 223: **** 12
[M::ha_hist_line] 224: **** 11
[M::ha_hist_line] 225: ** 5
[M::ha_hist_line] 226: ***** 14
[M::ha_hist_line] 227: ***** 15
[M::ha_hist_line] 228: *** 9
[M::ha_hist_line] 229: ***** 16
[M::ha_hist_line] 230: ***** 16
[M::ha_hist_line] 231: ** 5
[M::ha_hist_line] 232: **** 12
[M::ha_hist_line] 233: **** 12
[M::ha_hist_line] 234: **** 12
[M::ha_hist_line] 235: *** 9
[M::ha_hist_line] 236: ******* 20
[M::ha_hist_line] 237: **** 11
[M::ha_hist_line] 238: ***** 14
[M::ha_hist_line] 239: ***** 16
[M::ha_hist_line] 240: ****** 18
[M::ha_hist_line] 241: ***** 14
[M::ha_hist_line] 242: ** 5
[M::ha_hist_line] 243: *** 8
[M::ha_hist_line] 244: **** 13
[M::ha_hist_line] 245: ** 7
[M::ha_hist_line] 246: ** 6
[M::ha_hist_line] 247: ** 7
[M::ha_hist_line] 248: **** 11
[M::ha_hist_line] 249: *** 8
[M::ha_hist_line] 250: ** 5
[M::ha_hist_line] 251: **** 11
[M::ha_hist_line] 252: *** 8
[M::ha_hist_line] 253: **** 11
[M::ha_hist_line] 254: * 4
[M::ha_hist_line] 255: ** 6
[M::ha_hist_line] 256: * 4
[M::ha_hist_line] 257: ** 6
[M::ha_hist_line] 258: ** 7
[M::ha_hist_line] 259: * 3
[M::ha_hist_line] 260: ** 5
[M::ha_hist_line] 261: * 2
[M::ha_hist_line] 262: * 3
[M::ha_hist_line] 263: * 2
[M::ha_hist_line] 264: * 3
[M::ha_hist_line] 265: * 2
[M::ha_hist_line] 266: * 3
[M::ha_hist_line] 267: * 3
[M::ha_hist_line] 268: ** 7
[M::ha_hist_line] 269: ** 6
[M::ha_hist_line] 270: * 4
[M::ha_hist_line] 271: ** 6
[M::ha_hist_line] 272: ** 6
[M::ha_hist_line] 273: * 2
[M::ha_hist_line] 274: * 3
[M::ha_hist_line] 275: ** 6
[M::ha_hist_line] 276: * 4
[M::ha_hist_line] 277: *** 8
[M::ha_hist_line] 278: *** 9
[M::ha_hist_line] 279: ** 6
[M::ha_hist_line] 280: *** 8
[M::ha_hist_line] 281: *** 8
[M::ha_hist_line] 282: *** 9
[M::ha_hist_line] 283: *** 9
[M::ha_hist_line] 284: * 3
[M::ha_hist_line] 285: *** 8
[M::ha_hist_line] 286: ** 5
[M::ha_hist_line] rest: *************************************************************************************************> 315
[M::ha_analyze_count] left: none
[M::ha_analyze_count] right: none
[M::ha_pt_gen] peak_hom: 50; peak_het: 7
[M::ha_ct_shrink::116.39816.84] ==> counted 32288 distinct minimizer k-mers
[M::ha_pt_gen::] counting in normal mode
[M::yak_count] collected 2686889 minimizers
[M::ha_pt_gen::116.83316.82] ==> indexed 2684623 positions, counted 32288 distinct minimizer k-mers
[M::ha_assemble::127.226[email protected]] ==> found overlaps for the final round
[M::ha_print_ovlp_stat] # overlaps: 4014598
[M::ha_print_ovlp_stat] # strong overlaps: 1997279
[M::ha_print_ovlp_stat] # weak overlaps: 2017319
[M::ha_print_ovlp_stat] # exact overlaps: 3911232
[M::ha_print_ovlp_stat] # inexact overlaps: 103366
[M::ha_print_ovlp_stat] # overlaps without large indels: 4014079
[M::ha_print_ovlp_stat] # reverse overlaps: 1117045
[M::ha_opt_update_cov_min] updated max_n_chain to 50000
Writing reads to disk...
Reads has been written.
Writing ma_hit_ts to disk...
ma_hit_ts has been written.
Writing ma_hit_ts to disk...
ma_hit_ts has been written.
bin files have been written.
[M::purge_dups] homozygous read coverage threshold: 49
[M::purge_dups] purge duplication coverage threshold: 62
[M::ug_ext_gfa::] # tips::8
Writing raw unitig GFA to disk...
Writing processed unitig GFA to disk...
[M::purge_dups] homozygous read coverage threshold: 49
[M::purge_dups] purge duplication coverage threshold: 62
[M::mc_solve:: # edges: 4]
[M::mc_solve_core_adv::0.000] ==> Partition
[M::adjust_utg_by_primary] primary contig coverage range: [41, infinity]
Writing primary contig GFA to disk...
Writing alternate contig GFA to disk...
Inconsistency threshold for low-quality regions in BED files: 70%
[M::main] Version: 0.19.8-r603
[M::main] CMD: /u/project/geschwind/leqi0001/software/hifiasm/hifiasm -o /u/project/geschwind/leqi0001/longreads/assembly_phased/GIH.92.C2.hap2 -t 32 --primary --hg-size 2m -D 1000 -N 20000 GIH.92.C2.hap2.fastq.gz
[M::main] Real time: 137.101 sec; CPU: 2193.612 sec; Peak RSS: 16.468 GB

from hifiasm.