Comments (2)
[M::ha_hist_line] 21
means the frequency of 31-mers that occur 21 times, instead of 21-mers.
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Got it. using merqury's bestK I also get 21. Do you know if this is also a different K, and for a rodent genome (2.5Gb) you'd suggest keeping the standard k=30? thanks again for the clarifications.
from hifiasm.
Related Issues (20)
- missing 8Mb sequences in the assembly HOT 6
- Empty haplotype 2 gfa files by ONT integration HOT 1
- Basic Question About HiFi Input HOT 3
- Spend too long times to run hifiasm HOT 6
- Switch error on X and Y chromosome HOT 2
- *.ovlp.bin file HOT 1
- Resolving switching error (?)
- Interchromosomal misjoin HOT 2
- Read error correction does not reduce the number of kmers present once, twice or three times HOT 1
- Recreate p_ctg from p_utg HOT 3
- In the diploid assembly, hfiiasm identified a value that did not exist in the k-mer plot as the "homozygous read coverage threshold".
- fungi diploid assemble phasing errors
- What is the strategy for Ultra-long ONT integration? HOT 6
- No further progress after generating *bin files HOT 1
- Issues with Hexaploid Assembly HOT 4
- Numerous spurious contig overlaps in assemblies HOT 10
- output GFA with J lines in scaffolding mode
- Output that maps repeat shrapnels to unitigs and to scaffolded chromsomes
- High Duplication in my Assembly...l3 (purge-dup) doesn't help much HOT 1
- How to classify hifi reads into haplotype genomes? minimap2 did not work well HOT 3
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