Comments (3)
It might be harder. Does hifiasm assemble two different alleles for HLA-DRB1 into one contig?
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The two different alleles for HLA-DRB1 are assembled on different contigs.
from hifiasm.
I see. Then it might be harder since MHC is quite challenge.
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Related Issues (20)
- output GFA with J lines in scaffolding mode
- Output that maps repeat shrapnels to unitigs and to scaffolded chromsomes
- High Duplication in my Assembly...l3 (purge-dup) doesn't help much HOT 1
- How to classify hifi reads into haplotype genomes? minimap2 did not work well HOT 3
- False inserts over duplicated regions (TRBV12-3/4) HOT 2
- Whether unitig will be filtered based on the hic signal of unitig HOT 2
- Hifiasm Assembly Purging HOT 2
- "c" suffix on contigs HOT 1
- The genome size of p_ctg.fa is smaller than survey HOT 2
- output of partial phasing - some unitig can be missing in one haploid? HOT 3
- assembly genome is bigger than survey, error log HOT 1
- v0.15.3 hom-peak and het-peak error HOT 2
- Running hifiasm with unsupported option gives segmentation fault
- chimeras in long SSRs
- Question about the -5 parameter
- Potential Translocation Assembly HOT 1
- Hifiasm assembly results and run log issues
- Different size of hap1 and hap2
- Cannot run on HPC with older ubuntu version. HOT 1
- Thoughts on using parental Hi-C reads for trio-binning?
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