Comments (3)
I had a similar problem. I also noticed that command
hifiasm -o yMyxXan -t 38 /lustre/projects/dazzlerAssembly/test_hifi_snake/ccs/yMyxXan_ccs.fastq.gz 2> hifiasm.log
did not work. However,
hifiasm -o ymyxxan -t 38 /lustre/projects/dazzlerAssembly/test_hifi_snake/ccs/yMyxXan_ccs.fastq.gz 2> hifiasm.log
worked. Seems there are plenty of restraints on the -o
flag (no file paths, no capital letters...)
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Hi,
I got the same error and cannot figure out the problem.
Did you find a solution ?
from hifiasm.
Hi,
I'm not sure what the exact error was, but it seemed to have something to do with specifying the path of the output directory and the input files.
I don't think it likes having "/" in the output directory parameter, so I cd'ed in the directory and specified the output as -o assembly
.
Then I also changed the input parameters to relative paths instead of absolute paths.
I don't know if both changes were necessary, but it make it work in the end.
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