Comments (1)
It is hard. But you can get this information by aligning hap1 to hap2 using minimap2.
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Related Issues (20)
- issue in generating hap1 and hap2 asm files
- larger assembly size than kmer estimation genome size HOT 1
- larger assembly size than kmer estimation genome size HOT 2
- Why more contigs always present in haplotype 1 than haplotype 2? HOT 2
- overlap parameter HOT 2
- How do you assemble chromosomes X and Y? HOT 3
- Add Options for Pore-C Data HOT 1
- Output interpretation with HiFi+ONT+HiC with inbred samples + `-l0` HOT 1
- low BUSCO scores HOT 1
- Mitigate Overlapping Sequence Assignments in Haplotypes HOT 3
- Help!!! Segmentation fault (core dumped) HOT 1
- Question about the depth of ONT ultra-long reads HOT 1
- Homotetraploid, super-large genome, with different parameters, the size of p_utg varies greatly? HOT 2
- setting K parameter in yak HOT 2
- how to make the correct genome size estimation for allotetraploid species? HOT 2
- Possible missing one haplotype in human assemblies HOT 2
- No haploid.gfa files output in trio-binning mode HOT 3
- Hifi + Hi-c + ONT assembly fails
- In Trio-binning, always more on hap1 despite (almost) same sequences for paternal and maternal
- discontinuous assembly with shorter pacbio hifi reads but high coverage HOT 2
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