Comments (5)
Did hifiasm generate bin files? It seem not be a bug.
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no bin files were generated. I am working on a HPC with 2TB RAM. I also tested with sub sampled data (50x) and still the same error at same step
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Could you please show the size of yak index?
from hifiasm.
Hifiasm has done the HiFi correction but was killed when writting the bin files to the disk. Could you please have a look if there is anything abnormal for the disk?
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yak files size is 25G each. yak files were written to the same disk but hifiasm is failing at same step (as in log file) even with earlier versions. As you mentioned it looks like not a bug. Thank you
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Related Issues (20)
- issue in generating hap1 and hap2 asm files
- larger assembly size than kmer estimation genome size HOT 1
- larger assembly size than kmer estimation genome size HOT 2
- Why more contigs always present in haplotype 1 than haplotype 2? HOT 2
- overlap parameter HOT 2
- How do you assemble chromosomes X and Y? HOT 3
- Add Options for Pore-C Data HOT 1
- Output interpretation with HiFi+ONT+HiC with inbred samples + `-l0` HOT 1
- low BUSCO scores HOT 1
- Mitigate Overlapping Sequence Assignments in Haplotypes HOT 3
- Help!!! Segmentation fault (core dumped) HOT 1
- Question about the depth of ONT ultra-long reads HOT 1
- Homotetraploid, super-large genome, with different parameters, the size of p_utg varies greatly? HOT 2
- setting K parameter in yak HOT 2
- how to make the correct genome size estimation for allotetraploid species? HOT 2
- Possible missing one haplotype in human assemblies HOT 2
- No haploid.gfa files output in trio-binning mode HOT 3
- Hifi + Hi-c + ONT assembly fails
- In Trio-binning, always more on hap1 despite (almost) same sequences for paternal and maternal
- discontinuous assembly with shorter pacbio hifi reads but high coverage HOT 2
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