Topic: visium Goto Github
Some thing interesting about visium
Some thing interesting about visium
visium,Code companion to the publication "High resolution mapping of the breast cancer tumor microenvironment using integrated single cell, spatial and in situ analysis of FFPE tissue"
Organization: 10xgenomics
Home Page: https://www.10xgenomics.com/
visium,Spatial alignment of single cell transcriptomic data.
Organization: broadinstitute
visium,Course Assignment on Clustering of Spatial Transcriptomics Data
User: gurbaaz27
visium,R package using ICA based method for spatial transcriptomics analysis (Visium/Slide-seq/CosMX/MERSCOPE)
Organization: gustaveroussy
visium,A Julia package for single cell and spatial data analysis
User: haojiawu
visium,Spatial Transcriptomics Dashboard
Organization: ismms-himc
visium,ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method in FASTQ format.
User: jfnavarro
visium,Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project
Organization: lieberinstitute
Home Page: https://doi.org/10.1038/s41593-020-00787-0
visium,spatialDLPFC project involving Visium (n = 30), Visium SPG (n = 4) and snRNA-seq (n = 19) samples
Organization: lieberinstitute
Home Page: http://research.libd.org/spatialDLPFC/
visium,Code for the spatialLIBD R/Bioconductor package and shiny app
Organization: lieberinstitute
Home Page: http://LieberInstitute.github.io/spatialLIBD/
visium,Visium SPG AD project (n = 10) using Visium Spatial Proteogenomics (Visium-SPG) on dissections from the inferior temporal cortex (ITC) from Alzheimer's disease cases and controls.
Organization: lieberinstitute
Home Page: https://research.libd.org/Visium_SPG_AD
visium,Image processing pipeline for spatial projects
Organization: lieberinstitute
Home Page: http://research.libd.org/VistoSeg/
visium,Pipeline for SpatialTranscriptomics and 10X Visium data
User: lima1
visium,CanvasXpress: A JavaScript Library for Data Analytics with Full Audit Trail Capabilities.
User: neuhausi
Home Page: https://www.canvasxpress.org
visium,Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.
Organization: nf-core
Home Page: https://nf-co.re/spatialvi
visium,Repo linked to our recent publication in Science Advances
User: olivierraineteausbri
visium,Spatial Transcriptomics Quantification pipeline for 10x Visium and H&E-stained whole slide images
Organization: thejacksonlaboratory
Home Page: https://github.com/TheJacksonLaboratory/STQ
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