Topic: geneontology Goto Github
Some thing interesting about geneontology
Some thing interesting about geneontology
geneontology,Stochastic Gene Ontology Enrichment Analyses (GOEA) Simulations in manscript + Multiple-Test Correction Simulations
User: dvklopfenstein
geneontology,Template R code for bioinformatics analysis pipeline of transcriptomic Illumina datasets
User: eriklarsen4
geneontology,Deposited R scripts allow to execute a complete RNA-seq Pipeline, starting from sequence reads (FASTQ files) to mapping/annotate the genome using a reference, to counts the number of reads for every gene. when raw counts are obtained, DESeq2 module permits to find differentially expressed genes (DEG) and to perform statistical analysis. The last module of the project allows you to use clusterprofiler in order to perform ORA and GSEA analysis (over-representation analysis and gene set enrichment analysis) using GeneOntology (GO), disease ontology (DO), KEGG, reactome eg...
User: francescopatane96
geneontology,AmiGO is the public interface for the Gene Ontology.
Organization: geneontology
Home Page: http://amigo.geneontology.org
geneontology,Contributor data pool: an experimental freestanding structured resource for external data contributors
Organization: geneontology
geneontology,Javascript Library to translate CURIEs to IRIs and vice versa
Organization: geneontology
geneontology,A repository to discuss addition of terms for deep sea microbial ecology
Organization: geneontology
geneontology,Repository for storing GO documentation, directly available through the general GO site
Organization: geneontology
Home Page: http://geneontology.org
geneontology,This repository hosts the tracker for issues pertaining to GO annotations.
Organization: geneontology
geneontology,Announcements related to ontology changes that may impact groups using GO, such as obsoletions, merges, etc.
Organization: geneontology
geneontology,Gene Ontology API deployment
Organization: geneontology
Home Page: http://api.geneontology.org/api
geneontology,Gene Ontology RDF GraphStore
Organization: geneontology
geneontology,Automated and manual mappings
Organization: geneontology
geneontology,Jupyter notebooks for GO
Organization: geneontology
geneontology,Source ontology files for the Gene Ontology
Organization: geneontology
Home Page: http://geneontology.org/page/download-ontology
geneontology,Schema for Gene Ontology Causal Activity Models defined using RDF Shapes
Organization: geneontology
geneontology,A collection of metadata, tools, and files associated with the Gene Ontology public web presence.
Organization: geneontology
Home Page: http://geneontology.org
geneontology,Export GO-CAMs to SIF (Python)
Organization: geneontology
Home Page: http://cytocam.geneontology.cloud
geneontology,The Gene Ontology Helpdesk
Organization: geneontology
Home Page: http://help.geneontology.org
geneontology,
Organization: geneontology
geneontology,noctua entity ontology
Organization: geneontology
geneontology,Graph-based modeling environment for biology, including prototype editor and services
Organization: geneontology
Home Page: http://noctua.geneontology.org/
geneontology,
Organization: geneontology
geneontology,Simple annoton editor workbench for Noctua.
Organization: geneontology
geneontology,
Organization: geneontology
geneontology,This is the data repository for the models created and edited with the Noctua tool stack for GO.
Organization: geneontology
Home Page: http://noctua.geneontology.org/
geneontology,Quick and dirty client-side reasoner for Noctua
Organization: geneontology
geneontology,OBO-Edit is an open source ontology editor written in Java.
Organization: geneontology
geneontology,Basic and Advanced OBO Graphs: specification and reference implementation
Organization: geneontology
geneontology,This curation tool allows curators to make precise assertions as to when functions were gained and lost during evolution and record the evidence (e.g. experimentally supported GO annotations and phylogenetic information including orthology) for those assertions.
Organization: geneontology
geneontology,One of the main uses of the GO is to perform enrichment analysis on gene sets. For example, given a set of genes that are up-regulated under certain conditions, an enrichment analysis will find which GO terms are over-represented (or under-represented) using annotations for that gene set.
Organization: geneontology
geneontology,Code for converting between BioPAX pathways and Gene Ontology Causal Activity Models (GO-CAM)
Organization: geneontology
geneontology,Declarative pipeline for the Gene Ontology.
Organization: geneontology
Home Page: https://build.geneontology.org/job/geneontology/job/pipeline/
geneontology,Protégé plugin displaying inferred taxon constraints
Organization: geneontology
geneontology,Material for GO OWL/Protege Tutorial
Organization: geneontology
Home Page: http://go-protege-tutorial.readthedocs.io/en/latest/
geneontology,(DEPRECATED) Short form matrix view of all GO annotations for a given gene
Organization: geneontology
geneontology,scala app for converting SynGO JSON to OWL (ttl) for loading into noctua
Organization: geneontology
geneontology,Web-application for pattern-based ontology class generation
Organization: geneontology
geneontology,This repository contains a collection of web components, initially centered on the GO ribbon, a UI tool to visualize a summary of annotations for gene and gene sets.
Organization: geneontology
Home Page: http://geneontology.org/ribbon.html
geneontology,Gene Set Clustering based on Functional annotation
User: genescf
geneontology,FunMappOne: a tool to summarize and visually navigate functional categories in multiple experiments.
Organization: greco-lab
Home Page: https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-2639-2
geneontology,Bayesian OWL ontology merging
Organization: incatools
Home Page: https://incatools.github.io/boomer/
geneontology,Ontology Access Kit: A python library and command line application for working with ontologies
Organization: incatools
Home Page: https://incatools.github.io/ontology-access-kit/
geneontology,Granular Functional Filtering (Gruffi) to isolate stressed cells
User: jn-goe
geneontology,Analysies of gene expression data using Gene Ontology
User: kevinrue
geneontology,An ontology of gross anatomy covering metazoa. Works in concert with https://github.com/obophenotype/cell-ontology
Organization: obophenotype
Home Page: http://obophenotype.github.io/uberon/
geneontology,The current main function of this project is to help people with .gaf file analysis.
User: pranavkhade
geneontology,python code which i coded using the mathematical expression for the genome based ontologies annotation and the phylogenomics informativeness
User: sablokgaurav
geneontology,Comparison of protein learning
Organization: sinc-lab
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