pip install PyGWAS
To get information about the various commands run:
pygwas -h
License: MIT License
When using a mac/maf threshold that would filter all the SNPs, the plotting function will crash with:
IndexError: index -1 is out of bounds for axis 0 with size 0
In some cases very low pvalues are produced which will be handles as 0.0. When converting to a score (-log10) this will result in a math domain error.
Hi,
Is there any documentation for pygwas besides what is available from the command line help?
Thanks!
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