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adtree-py

A sparse all-dimensions tree tool-kit in Python for statistical machine learning acceleration

ai-chip

A list of ICs and IPs for AI, Machine Learning and Deep Learning.

ariba

Antimicrobial Resistance Identification By Assembly

awesome-deep-learning

A curated list of awesome Deep Learning tutorials, projects and communities.

awesome-deepbio

A curated list of awesome deep learning applications in the field of computational biology

benchm-dl

Playing with various deep learning tools and network architectures

cm229-genotype-imputation-using-bidirectional-rnn

Genotype Imputation using Bidirectional Recurrent Neural Network

cntk

Microsoft Cognitive Toolkit (CNTK), an open source deep-learning toolkit

crossbow

Variant calling from sequence reads using cloud computing

curatedmetagenomicdata

Curated and processed metagenomic data through ExperimentHub

deap

Distributed Evolutionary Algorithms in Python

deconvnet_analysis

Code for "Salient Deconvolutional Networks, Aravindh Mahendran, Andrea Vedaldi, ECCV 2016"

decres

Deep learning for identifying cis-regulatory elements and other applications

deep-learning-materials

deep-review

A collaboratively written review paper on deep learning, genomics, and precision medicine

deep_inside_convolutional_networks

This is a caffe implementation to visualize the learnt model

deepcons

Understanding sequence conservation with deep learning

desingle

An R package for detecting three types of differential expression in single-cell RNA-seq data. To view it in Bioconductor: https://bioconductor.org/packages/DEsingle

dnn4g2p

Using deep neural network to predict coat color from SNP data

dsd

DSD model zoo. Better accuracy models from DSD training on Imagenet with same model architecture

fast-lmm

Python version of Factored Spectrally Transformed Linear Mixed Models

gbspipeline

If this is your first time visiting, please visit the project page HERE:

gswgbs

R package Genomic Selection with Genotyping-by-Sequencing

h2o-3

Open Source Fast Scalable Machine Learning Platform For Smarter Applications: Deep Learning, Gradient Boosting & XGBoost, Random Forest, Generalized Linear Modeling (Logistic Regression, Elastic Net), K-Means, PCA, Stacked Ensembles, Automatic Machine Learning (AutoML), etc.

h2o-tutorials

Tutorials and training material for the H2O Machine Learning Platform

image-compression-cnn

Semantic JPEG image compression using deep convolutional neural network (CNN)

incubator-mxnet

Lightweight, Portable, Flexible Distributed/Mobile Deep Learning with Dynamic, Mutation-aware Dataflow Dep Scheduler; for Python, R, Julia, Scala, Go, Javascript and more

interactive-dashborads

kieranhealy.hugo

The source code to http://kieranhealy.org

line_profiler

Line-by-line profiling for Python