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License: GNU General Public License v3.0
Database of genomes integrated from the gut microbiome and other environments
License: GNU General Public License v3.0
Hi,Stephen:
How do you confirm than a gene from a OTU is a single-gene when you ues PhyEco database by hmmscan.What do you set up any cut-off?
best
YYY
Thanks so much!
Hi, Which database the "species_alt_id" belong to? Can it be mapped to the NCBI taxonomy ID?
Hi Stephen,
I was wondering if you have the sample-specific metagenomes that you assembled available. These would be of great use to me in addition to the representative genomes.
Thank you,
Matt
download link for MAGs can not download. And can you provide a link for download 23790 OTU fasta?
thank you very much!
hello how and where i can obtain the HGM dataset?
Can you please provide more information about the 206,581 IGG genomes that were clustered into into 23,790 representative genomes?
I understand that it includes samples from the HGM, PATRIC and IMG datasets. Can you tell which and when the genomes were downloaded from the PATRIC and IMG? All of them were reconstructed from the human gut?
Many thanks!
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