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iggdb's Issues

Species alternative ID?

Hi, Which database the "species_alt_id" belong to? Can it be mapped to the NCBI taxonomy ID?

Sample-specific metagenomic assemblies

Hi Stephen,

I was wondering if you have the sample-specific metagenomes that you assembled available. These would be of great use to me in addition to the representative genomes.

Thank you,
Matt

IGG genomes

Can you please provide more information about the 206,581 IGG genomes that were clustered into into 23,790 representative genomes?
I understand that it includes samples from the HGM, PATRIC and IMG datasets. Can you tell which and when the genomes were downloaded from the PATRIC and IMG? All of them were reconstructed from the human gut?
Many thanks!

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