Name: Christian Diener
Type: User
Bio: Lifelong relationship with microbes, now analyzing them for a living. Researcher interested in all things microbe and tech.
Twitter: thaasophobia
Location: Seattle, WA
Blog: http://cdiener.com
Hi there 👋. I'm a microbial ecologist studying the human gut microbiome. 🦠+💻 = 💓
Our lab GitHub can be found here.
Most of my work takes place in other Github organizations.
amazon-sagemaker-examples
Example notebooks that show how to apply machine learning, deep learning and reinforcement learning in Amazon SageMaker
architeuthis
Tools to analyze and summarize data for Kraken2.
arduino
Source code and materials for Arduino projects. Nothing fancy, I'm just learning.
bar1_project
Source code for the publication of Diener, Schreiber, Giese et. al. (2014)
bioconda-recipes
Conda recipes for the bioconda channel.
biom-format
The Biological Observation Matrix (BIOM) Format Project
cddlib
Github fork of Komei Fukuda's cddlib
cdiener
Repo for the profile page.
cobra-docker
Dockerfile to build a single user jupter notebook server running cobrapy and additional tools for flux-based modeling.
cobra-feedstock
A conda-smithy repository for cobra.
cobra_whats_new
Simple notebook showcasing the new COBRApy features.
cobrapy
COBRApy is a package for constraint-based modeling of biological networks
cobrapy_website
Mockup for the new cobrapy website
conda-forge-pinning-feedstock
A conda-smithy repository for conda-forge-pinning.
coptr
Accurate and robust inference of microbial growth dynamics from metagenomic sequencing
creative-commons-markdown
Markdown-formatted Creative Commons licenses
dcf
Peptide design by compatible functions.
dotfiles
Configs for Linux.
dycone
Analyze enzyme regulation with metabolome data.
embl_gems
EMBL GEMs: A collection of GEnome-scale Models for bacterial species
gcan
Small script to analyze biological growth curve data.
gopractice
Several small Golang practice programs. Mostly inspired by CS50.
govitae
Render JSON résumés with Go.
guacamole
Our Guacamole recipe
hadoop-teaching
Simple docker image giving a functional hadoop single node cluster for teaching purposes.
hugo-page
A personal web site built with HUGO.
kcone-paper
Materials and protocols for the publication of Diener et. al.
microbiome-conferences-c
This repo collects the list of conferences/meetings/workshops etc. related to microbiome science and tools.
nxviz
Visualization Package for NetworkX
odevo
A fast and parallel ordinary differential equation optimizer with compiled systems and easy scripting interfaces.
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
Django
The Web framework for perfectionists with deadlines.
Laravel
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
Microsoft
Open source projects and samples from Microsoft.
Google
Google ❤️ Open Source for everyone.
Alibaba
Alibaba Open Source for everyone
D3
Data-Driven Documents codes.
Tencent
China tencent open source team.
