Hi there 👋. I'm a microbial ecologist studying the human gut microbiome. 🦠+💻 = 💓
Our lab GitHub can be found here.
Most of my work takes place in other Github organizations.
Name: Christian Diener
Type: User
Bio: Lifelong relationship with microbes, now analyzing them for a living. Researcher interested in all things microbe and tech.
Twitter: thaasophobia
Location: Seattle, WA
Blog: http://cdiener.com
Hi there 👋. I'm a microbial ecologist studying the human gut microbiome. 🦠+💻 = 💓
Our lab GitHub can be found here.
Most of my work takes place in other Github organizations.
Example notebooks that show how to apply machine learning, deep learning and reinforcement learning in Amazon SageMaker
Tools to analyze and summarize data for Kraken2.
Source code and materials for Arduino projects. Nothing fancy, I'm just learning.
Source code for the publication of Diener, Schreiber, Giese et. al. (2014)
Conda recipes for the bioconda channel.
The Biological Observation Matrix (BIOM) Format Project
Github fork of Komei Fukuda's cddlib
Repo for the profile page.
Dockerfile to build a single user jupter notebook server running cobrapy and additional tools for flux-based modeling.
A conda-smithy repository for cobra.
Simple notebook showcasing the new COBRApy features.
COBRApy is a package for constraint-based modeling of biological networks
Mockup for the new cobrapy website
A conda-smithy repository for conda-forge-pinning.
Accurate and robust inference of microbial growth dynamics from metagenomic sequencing
Markdown-formatted Creative Commons licenses
Peptide design by compatible functions.
Configs for Linux.
Analyze enzyme regulation with metabolome data.
EMBL GEMs: A collection of GEnome-scale Models for bacterial species
Small script to analyze biological growth curve data.
Several small Golang practice programs. Mostly inspired by CS50.
Render JSON résumés with Go.
Our Guacamole recipe
Simple docker image giving a functional hadoop single node cluster for teaching purposes.
A personal web site built with HUGO.
Materials and protocols for the publication of Diener et. al.
Small example on how to run an FVA for specific exchanges in MICOM
This repo collects the list of conferences/meetings/workshops etc. related to microbiome science and tools.
Visualization Package for NetworkX
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.