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atlas

ATLAS - Three commands to start analyzing your metagenome data

awesome

😎 Awesome lists about all kinds of interesting topics

awesome-bioinformatics

A curated list of awesome Bioinformatics libraries and software.

biocode

Bioinformatics script collection

bioinformatics-one-liners

Bioinformatics one liners from Ming Tang

biopython

Official git repository for Biopython (originally converted from CVS)

codespaces_test

desman

De novo Extraction of Strains from MetAgeNomes

flask

A microframework based on Werkzeug, Jinja2 and good intentions

github-for-developers-7

hannigan_crcvirome_mbio_2018

Investigating the gut virus communities associated with colon cancer.

kraken-rs

A novice rust user's attempt to rewrite kraken2. Lots of help from LLMs, any suggestions and PRs welcome. Help me become a better rustacean!

magpy

Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)

mladen5000.github.io

Finn-Perkins website

oldweb

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

polymer2014

Current site project

python-algorithms

All Algorithms implemented in Python

python-quickstart-codespaces

MSLearn sample code

rosalind_rust

rust_walkdir

saft

Calculate free energy for SAFT model in python...

scientific-visualization-book

An open access book on scientific visualization using python and matplotlib

scikit-bio

scikit-bio is an open-source, BSD-licensed, Python package providing data structures, algorithms, and educational resources for bioinformatics.

skills-resolve-merge-conflicts

My clone repository

storm

An LLM-powered knowledge curation system that researches a topic and generates a full-length report with citations.

strainge-paper

Analysis scripts and Jupyter notebooks accompanying the StrainGE paper

strainr

Strain-resolved classification and assembly primer

sui

Sui, a next-generation smart contract platform with high throughput, low latency, and an asset-oriented programming model powered by the Move programming language

test-site

site

testing-codespaces