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Deep learning the cis-regulatory code for gene expression in selected model plants
When I run python train_msr_models_leaf.py
, it returns
Traceback (most recent call last):
gene_model = pd.read_csv('gene_models/zea_sol_ara_sor_52.gtf', sep='\t')
File "/opt/conda/envs/envd/lib/python3.9/site-packages/pandas/io/parsers/readers.py", line 1026, in read_csv
return _read(filepath_or_buffer, kwds)
File "/opt/conda/envs/envd/lib/python3.9/site-packages/pandas/io/parsers/readers.py", line 620, in _read
parser = TextFileReader(filepath_or_buffer, **kwds)
File "/opt/conda/envs/envd/lib/python3.9/site-packages/pandas/io/parsers/readers.py", line 1620, in __init__
self._engine = self._make_engine(f, self.engine)
File "/opt/conda/envs/envd/lib/python3.9/site-packages/pandas/io/parsers/readers.py", line 1880, in _make_engine
self.handles = get_handle(
File "/opt/conda/envs/envd/lib/python3.9/site-packages/pandas/io/common.py", line 873, in get_handle
handle = open(
FileNotFoundError: [Errno 2] No such file or directory: 'gene_models/zea_sol_ara_sor_52.gtf'
Can you share the 'gene_models/zea_sol_ara_sor_52.gtf' file?
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