namlab Goto Github PK

19_mlcb

Code for Tareen & Kinney (MLCB 2019) https://doi.org/10.1101/835942

2024_intro_rnaseq_analysis_course

Introduction to RNAseq Analysis Course Material

abul-master-thesis

Co-expression and Co-evolution profiles of heat responsive genes in Tomato

aiyesa_tomato_differential_gene_expression_analysis

Internship project aimed at identifying and investigating deferentially expressed genes in tomato (S.lycopersicum) using available data on heat stress experiment from online database.

chessproject

This is a public repository of CHESS project

deepcre

Deep learning the cis-regulatory code for gene expression in selected model plants

dl_wheat

fastqc

csf fork of fastqc for usage on selected reads of unaligned bam file

hetcrop

Prediction-based normalization for developmental heterochrony in parallel molecular-level and phenomic studies in plants

inference-of-grn-using-fused-lasso

Gene regulatory network inference using fused LASSO on multiple data sets: application to Escherichia coli

ipk_r_courses

IPK R courses, tutorials etc.

kilbil

Custom code used in the manuscript:

moca_blue

oma-plant-genomes-proj

For updated plant genome data, and code for quality assesment of protein sequences and gene co-evolution analysis.

planted

RTS Simulation, Plant Survival Game

planted-ai

Reinforcement learning based bots playing the PlantEd game

qbio

QBIO HHU course materials

rnaseq-mapper

tomato-rna-meta

Data, code, and results for our paper Identification of core, conditional and crosstalk components of tomato heat stress response using integrative transcriptomics and orthology (DOI coming). If you use any of our code or results in a scientific publication, we would be grateful if you cite the paper.

tomatophagy

variant-caller

Variant Calling Pipeline Using GATK4 and Nextflow

wheatsousi

WheatSouSi: Wheat source-sink relationships and limitations