kirbyju / tcia_notebooks Goto Github PK

Hello,
I have tried all the notebooks in this repo, but i noticed in the new itk versions, i cant visualize the segmented tumor in the 3d visulization. Can you please help me find the issue?

Hi,

I'm using Ubuntu 20.04 and is new to TCIA. I created a fresh environment and installed nothing except jupyter notebook. I use the command

pip install notebook

to install jupyter notebook.

But I have a conflict when trying to install tcia-utils. I got

ERROR: jupyterlab-server 2.25.2 has requirement jsonschema>=4.18.0, but you'll have jsonschema 3.2.0 which is incompatible.
ERROR: jupyter-events 0.9.0 has requirement jsonschema[format-nongpl]>=4.18.0, but you'll have jsonschema 3.2.0 which is incompatible.

What version of jupyter-notebook is supported?

Thanks!

I was trying to download single images from the DLBCL-Morphology dataset but I couldn't find the collection in the getCollections() response due to which I cannot run the getSeries() function and the seriesUID. Is there some other way to access that dataset through the API or am I doing something wrong?

Dataset info:
DOI: 10.7937/NVA3-N783
URL: https://www.cancerimagingarchive.net/collection/dlbcl-morphology