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deeponcology's Projects

cadlab icon cadlab

Imaging Biomarkers and Computer-Aided Diagnosis Laboratory

cdd-cesm-dataset icon cdd-cesm-dataset

This is a helper repository for the CDD-CESM Mammogram Dataset containing all the tools for pre-processing and segmentation models.

colonsegnet icon colonsegnet

Official implementation of ColonSegNet: Real-Time Polyp Segmentation (Used in NVIDIA Clara Holoscan App for Polyp Segmentation)

consensusml icon consensusml

Machine Learning to Detect Cancer Biomarkers from RNAseq Data

ctheaddeformation icon ctheaddeformation

The CTHeadDeformation module is an open-sourced library for taking CT and cone-beam CT (CBCT) scans and deforming these scans in a way that simulates realistic head motion. Further information can be found in the repo wiki (https://github.com/ACRF-Image-X-Institute/CTHeadDeformation/wiki)

cxr-lc-old icon cxr-lc-old

Deep learning to predict incident lung cancer risk from chest radiograph images

dicom-fhir-integration icon dicom-fhir-integration

DICOM transformation engine based on Jinja templates, integrated with FHIR HL7 standard as an example. Contains a sample web application with FHIR widgets.

dvh-predict icon dvh-predict

Prediction of dose-volumes of the rectum, bladder and PTV for prostate cancer radiation therapy from volumes of rectum, bladder, PTV60 and PTV44 and overlap volumes using different regression methods.

embed_open_data-mammogram icon embed_open_data-mammogram

Data descriptor and sample notebooks for the Emory Breast Imaging Dataset (EMBED) hosted on the AWS Open Data Program

han5k icon han5k

[In Progressing]HaN5K: A project to develop foundation models for structure delineation in head and neck radiotherapy based on more than 5K CT scans and 10K clinical volumetric organs.

kaiju icon kaiju

A drag and drop web editor for React components.

kvasircapsule-seg icon kvasircapsule-seg

NanoNet: Real-Time Polyp Segmentation in Capsule Endoscopy & Colonoscopy [Contains an open-access capsule endoscopy dataset (2021 IEEE CBMS)]

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