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dedup

A merged read deduplication tool capable to perform merged read deduplication on single end data.

deep-learning-with-pytorch

Deep Learning with PyTorch, published by Packt

deepcrispr

deepest-fusion

DEEPEST-Fusion is a fusion detection algorithm specially designed for screening massive cancer sequencing databases

deephf

Core code for the DeepHF prediction tool

deeplearning-500-questions

深度学习500问，以问答形式对常用的概率知识、线性代数、机器学习、深度学习、计算机视觉等热点问题进行阐述，以帮助自己及有需要的读者。 全书分为18个章节，50余万字。由于水平有限，书中不妥之处恳请广大读者批评指正。 未完待续............ 如有意合作，联系[email protected] 版权所有，违权必究 Tan 2018.06

deeprank

deepromoter

Pytorch implementation of DeePromoter Active sequence detection for promoter(DNA subsequence regulates transcription initiation of the gene by controlling the binding of RNA polymerase)

deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

detect-seq

An unbiased method for genome-wide CBE off-targets assessment

dgidb

Rails frontend to The Genome Institute's drug gene interaction database.

digenome-toolkit

Digenome Toolkit

digenome-toolkit2

Digenome-toolkit ver2.

digenomitas

Digenome software

dmorgens-castle

dnafeaturesviewer

:eye: Python library to plot DNA sequence features (e.g. from Genbank files)

docgpt

ChatGPT directly within Google Docs as an Editor Add-on 📑

dragmap

DRAGEN open-source mapper

drmaav2-mock

Reference implementation of the DRMAAv2 C Language Binding

drug_bank_parser

drugbank

User-friendly extensions of the DrugBank database

drugbank-csv

DrugBank csv format data and python process demo

drugbankcadata

drugthatgene

DrugThatGene

dsnickfury3plusorchid

dsNickFury is for comparing a CRISPR target site against all other potential sites in a genome. Orchid is a package I'm developing to go with it for iterative CRISPR analysis over an exome.

eagle

Enhanced Artificial Genome Engine: next generation sequencing reads simulator

edison_lab_shared_metabolomics_uga

Official Edison Lab toolboxes and scripts for analyzing metabolomics data.

editpredict

editr

EditR: an algorithm for simple and cost effective measurement of base editing by quantifying Sanger trace fluorescence

elevation

End-to-end guide design for CRISPR/Cas9 with machine learning