Comments (2)
ERRO[10728] error waiting for container: unexpected EOF
I believe that (very confusing!) error message is from Docker. I found one possible cause that seems likely: running out of memory. The eleredef step can be very memory-intensive on some genomes and has caused similar problems for many users in various environments.
Does this problem occur for you frequently, or only with specific input files?
from tetools.
Thank you very much for your reply. As you said, it depends on our storage. We have 1t running memory, but this single task will occupy about 700g. Now I use CONDA for installation, and then modify ninja. Now this part can run normally. I haven't tried to use docker. I will use it later for testing.
Thank you very much for your reply!
Good luck
from tetools.
Related Issues (20)
- > The combine is a very confusing place for us. What causes such a deviation?
- Feature request: Make the Docker image multi-platform HOT 8
- forksys: Program terminated by a signal 9. HOT 1
- addRepbase.pl: no such file
- reasonaTE "https://github.com/DerKevinRiehl/transposon_annotation_reasonaTE" HOT 1
- hangup error on round5 of RepeatModeler on singularity sif v1.8, v1.85 HOT 1
- Error running repeatmodeler in container HOT 2
- rmblast does not work in new docker image for TETools 1.86. HOT 2
- error of repeatmasker in container HOT 1
- Docker Image Cannot Run LTRStruct pipeline HOT 1
- Customizing RepeatMasker libraries: Absent HOT 2
- Problems configuring RepeatClasifier on docker. HOT 8
- Request: LTR_retriever update from version 2.9.0 HOT 1
- Bump version to 2.0 HOT 1
- Command line fasta file scaffolds_final.fa does not exist! HOT 2
- famdb.py: command not found HOT 2
- Taxonomy::new() needs a path for a famdb directory! HOT 6
- LTRPipeline : Error - could not open clusters.dat! HOT 2
- RepeatModeler BuildDatabase can not open file
- MAFFT failed while running RepeatModeler
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from tetools.