Customizing RepeatMasker libraries: Absent about tetools HOT 2 CLOSED

Hi, instead of
singularity run -B $(pwd):/work dfam-tetools-latest.sif,
try running
singularity run -B /home/$USER/Libraries:/opt/RepeatMasker/Libraries dfam-tetools-latest.sif

If the steps to copy the library data out of the container worked, and you've added any additional files to the host system library directory, you just need to bind it in where RepeatMasker knows to look for it and run the update script. The /work directory in the container is just used for copying the data out, and any time you want the container to use your local library, just bind it in as above.
Also bear in mind that you may need to delete rmlib.config for tetoolsDfamUpdate.pl to work.

Let me know if that works!

from tetools.

Hi,
Now it works! Thank you for your advice.
I think not deleting the rmlib.config file might also have been the cause.

from tetools.