Comments (2)
kim2039
commented on August 11, 2024
This error is most likely caused by the NINJA version upgrade.
If downloading from the URL of the latest release of NINJA and compiling it, it shows that it is actually downloading a 0.95 version, not 0.99.
This has also been posted in an Issue of NINJA.
TravisWheelerLab/NINJA#46
I suggest using the older version of Ninja until this issue is resolved.
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yasutoishii
commented on August 11, 2024
Thanks Kim,
The version of NINJA was 0.95, as you mentioned.
I tried tetools v. 1.8, but LTRpipeline provided another error:
Running LtrHarvest...LtrPipeline: GenomeTools failed to run ltrharvest. Error code: 139
LtrPipeline: Ltrharvest returned an unexpected result line:
Segmentation fault (core dumped)
LTRPipeline: No results returned from LTR structural finder ( LtrHarvest ).
I assume the cause is the shotage of RAM (my PC has ~ 200 GB RAM).
I'll try it with more RAM!
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