plannet's Introduction

Version

v1.1.0

Description

Application to explore the different Schmidtea mediterranea predicted interactomes. Available at compgen.bio.ub.edu/PlanNET.

At the Computational Genomics Lab we have trained a Random Forest classifier to predict planarian protein-protein interactions by using homology inferences (see link to the published paper).

To see the code used to predict the planarian networks, go to this repository.

PlanNET was made using Django (https://www.djangoproject.com/), neo4j (https://neo4j.com/) and cytoscape js (http://js.cytoscape.org/).

Cite

S. Castillo-Lara, J.F. Abril
PlanNET: homology-based predicted interactome for multiple planarian transcriptomes
Bioinformatics, Volume 34, Issue 6, 15 March 2018, Pages 1016–1023, btx738

link to the published paper

Copyright

PlanNET web application to explore the interactomes of Schmidtea mediterranea.
Copyright (C) 2016  Sergio CASTILLO LARA

This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.

This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
GNU General Public License for more details.

You should have received a copy of the GNU General Public License
along with this program.  If not, see <http://www.gnu.org/licenses/>.

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